Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq145 118 4e-21 seq4879 116 1e-20 seq1740 100 1e-15 seq4363 96.9 1e-14 seq2640 89.7 2e-12 >seq145 Length=97958 Score = 118 bits (130), Expect = 4e-21 Identities = 194/276 (70%), Gaps = 9/276 (3%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || |||||||| ||||| || |||||||||||| ||||||| || ||||| |||||||| Sbjct 34306 GCCGTAATTACGGTTCCGGCATATTTCAATGATTCACAACGTCAGGCAACAAAAGATGCC 34247 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 ||| | ||||| ||||| | ||| | || || || || || || ||||| || || || Sbjct 34246 GGAAAAATTGCGGGTTTGGAAGTTTTGCGTATCATAAACGAGCCGACAGCTGCCGCACTT 34187 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| | ||| || ||| | || | | | | || | |||| ||| || Sbjct 34186 GCTTATGGTAT-GGATAA--AAACGCCACCG--GCACA----ATCGTTGTATATGACTTG 34136 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 || || || || ||| ||| | | ||| | ||||| ||||||||||| || Sbjct 34135 GGCGGTGGTACATTCGATGTTTCCATTTTGGAAATCGGTGATGGTGTATTTGAAGTTAAA 34076 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || ||||| ||||||||| | || ||||||||| Sbjct 34075 GCCACCAACGGTGATACTTTCTTGGGCGGTGAAGAT 34040 >seq4879 Length=17811 Score = 116 bits (128), Expect = 1e-20 Identities = 221/323 (68%), Gaps = 3/323 (1%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 |||||||| |||| ||||| | || | || || |||| || || || || || || Sbjct 7179 AAAATGAAGAAAACCGCAGAGGACTACCTGGGAACTACAGTCACAGAGGCTGTCATCACA 7238 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| ||||| ||||| || ||||||| || || || |||||||| || | || || Sbjct 7239 GTTCCTGCTTACTTCAACGACTCACAACGACAGGCTACAAAAGATGCCGGTAAAATCGCA 7298 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 ||| | |||| ||||| || || || |||||||||||||| || || | | | | Sbjct 7299 GGTCTCGATGTAAAACGAATCATCAACGAGCCTACAGCAGCTGCCCTCGC-TTTCGGTTT 7357 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | || | || || ||||||| | ||| || | ||| || ||||| || || Sbjct 7358 CAACAAGGACCAG--TCAAAAGAAAAGACTATCGCTGTCTATGACTTGGGTGGTGGTACA 7415 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 |||| |||| | ||| ||| || || ||||| || ||||| |||| || || Sbjct 7416 TTCGATATTTCTATCCTTGAGCTTGCTGACGGCGTATTCGAGGTAAAATCAACAAACGGA 7475 Query 451574 GATACTCATCTAGGAGGTGAAGA 451596 |||||||| || || ||||| || Sbjct 7476 GATACTCACCTCGGTGGTGATGA 7498 >seq1740 Length=34420 Score = 100 bits (110), Expect = 1e-15 Identities = 122/165 (74%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 |||||| || || || || ||||| || ||||| |||||||||||||| || || || || Sbjct 5912 AGTTACAGAGGCTGTTATCACTGTACCTGCTTACTTCAATGATGCACAGCGTCAGGCTAC 5853 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| || | || || || | |||| || || || || || |||||||| Sbjct 5852 AAAAGATGCCGGCAAGATCGCAGGACTTGATGTAAAGCGTATCATCAACGAGCCTACAGC 5793 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGa 451476 ||| ||||| |||||||| || || ||| | || | ||||||| Sbjct 5792 AGCAGCTCTTGCATATGGTCT-TGACAATGAGCAGGAGCAGAAGA 5749 >seq4363 Length=165290 Score = 96.9 bits (106), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 127372 CCGAACTGGTCATATTTTTGTCTTTTATCTGAATCACTTAAAATAGAATATGCTTCCGAA 127431 || || |||||||| | || | ||| |||| ||||| |||| | ||| ||||| | Sbjct 101296 CCAAATTGGTCATACTGTTTGCGTTTGTCTGGATCACGCAAAACATTATAGGCTTCTGCT 101355 Query 127432 ATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTTATCAGGATGATGT 127491 | |||||||||||| | |||||| || |||| | ||||||| |||||||||| | Sbjct 101356 ACTTCTTTAAATTTCTCTTCAGCCTC---CTTGTCACCAGGATTCTTGTCAGGATGATAT 101412 Query 127492 TTAACAGCTAATTTACGGTAAGCTTTTTTAATTTCTGCTTCAGTAGCATTTTTGTTAATT 127551 || | ||| | ||| | | | || ||||| ||||| | || | |||||||| | || Sbjct 101413 TTTAAAGCAAGTTTCCTGAATGCCTTTTTTATTTCATCAGCACTCGCATTTTTATCAACG 101472 Query 127552 CCTAGTATATCATA 127565 || |||| ||||| Sbjct 101473 CCAAGTACTTCATA 101486 >seq2640 Length=8223 Score = 89.7 bits (98), Expect = 2e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| || ||||| ||||| || || || || ||||| ||||| || || || || || Sbjct 6940 GTTACAGAAGCAGTTATTACCGTACCTGCATACTTCAACGATGCTCAGCGTCAGGCTACC 6881 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || ||||||||| | ||||| || || || || |||||||||||| Sbjct 6880 AAGGATGCCGGTAGAATTGCTGGTCTTGATGTTAAACGTATCATCAACGAACCTACAGCA 6821 Query 451433 GCTGCTCTAGCATATGG 451449 |||||| | || || || Sbjct 6820 GCTGCTTTTGCCTACGG 6804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975589324464692