Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4549 105 5e-17 seq2640 104 2e-16 seq2595 104 2e-16 seq145 104 2e-16 seq3881 96.9 3e-14 seq320 86.0 5e-11 >seq4549 Length=53065 Score = 105 bits (116), Expect = 5e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 || |||||| | || || |||| ||||| || || ||||| || |||||||||||||| Sbjct 44781 GTCTTTATCTAAGCCGTAAGCAAGCGCAGCCGCCGTCGGTTCGTTGATAATTCTCAAAAC 44722 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 | ||| || |||||| | || || ||||| || ||||| | ||| || ||||| || Sbjct 44721 TTCAAGCCCTGCAATTTTGCCCGCGTCTTTTGTTGCTTGACGTTGACTGTCATTAAAGTA 44662 Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGC 518331 || |||||||| ||||| || | |||||| || || | |||||| Sbjct 44661 AGCCGGAACAGTGATAACCGCTTGAGTTACAGTTTCGCCCAAATAAGC 44614 Score = 87.8 bits (96), Expect = 1e-11 Identities = 194/289 (67%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||||| |||||| || ||||| | ||| || || ||||||||||| || || Sbjct 45677 GCAGAAACATTAACAATACCGTTAGCATCAATATCGAAAGTAACTTCAATTTGCGGAACT 45618 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATT--AAATGTTCCCAGATTATTATTATCTT 517376 || | | | ||||| || || || ||| | ||| ||| ||| | |||||| | Sbjct 45617 CCACGCGGCGCAGGCGGAATATCT--GAAAGTACAAAACGTCCGAGAGTTTTATTACCGG 45560 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 517436 | | || || |||||||| |||| || || ||| | |||||| || | Sbjct 45559 CTGCCATTTCTCTTTCACCCTGCAAAACGTGAATTTCAACGCTTGATTGATTGTCAGCCG 45500 Query 517437 AAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 517496 ||||| ||| ||| ||||||| | |||||| ||||| || | |||||||| || | Sbjct 45499 CAGTTGAAAAGACTTGTGATTTTTGAGTAGGAATGGTTGTATTGCGTTCAATAATTTTTG 45440 Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 517545 | || || || ||||| | ||| || ||||| || || || || Sbjct 45439 TGCAAACGCCGCCCAAAGTTTCAATACCGAGTGAAAGTGGTGTAACGTC 45391 >seq2640 Length=8223 Score = 104 bits (114), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 518173 AAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACC 518232 || ||| || ||||||||||| || || ||||| || || || | ||||| |||||| Sbjct 6800 AACACCGTAGGCAAAAGCAGCTGCTGTAGGTTCGTTGATGATACGTTTAACATCAAGACC 6859 Query 518233 AGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 518292 ||||||||| || ||||| || || || || | || | |||||| || |||||||| || Sbjct 6860 AGCAATTCTACCGGCATCCTTGGTAGCCTGACGCTGAGCATCGTTGAAGTATGCAGGTAC 6919 Query 518293 AGTAATAACGGCATCAGTTACTTCTTTACC 518322 |||||||| || || || || | || ||| Sbjct 6920 GGTAATAACTGCTTCTGTAACCTTTTCACC 6949 >seq2595 Length=21368 Score = 104 bits (114), Expect = 2e-16 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 870797 ATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGA 870856 ||| |||| |||||||||||||| ||| |||| || |||||| || ||| || | Sbjct 6481 ATTGTTGTGGATTATTCTTCTCCGAATGTTGCAAAGGAAATGGCGGTTCATCATATACGT 6422 Query 870857 TCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTAT 870916 |||||| | || ||||| ||| || || || | ||| | |||| || | ||| | Sbjct 6421 TCAACTGTAATCGGTGATTCTGTTGTCAGAGTGCTTGAATTTCTTGGAAACAAGGTTATT 6362 Query 870917 CGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATATTAAA 870976 ||| || ||| | ||||||||||||||||| ||||| ||| | ||||| ||| || || Sbjct 6361 CGTGCCAACCATATAGGTGATTGGGGAACTCAGTTCGGAATGCTTATTGCGTATCTTGAA 6302 Query 870977 AA 870978 || Sbjct 6301 AA 6300 >seq145 Length=97958 Score = 104 bits (114), Expect = 2e-16 Identities = 247/370 (67%), Gaps = 14/370 (4%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 ||||| |||||||| | |||||| || ||||||||||| || | || | | ||||||| Sbjct 33285 ATACCGTTGGCATCAATATCAAAAGTTACTTCAATTTGCGGCATACCGCGCGGAGCAGGA 33344 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 || || ||| |||||| |||| ||| | | || |||| | | | || || ||| Sbjct 33345 GGAATACCTACCAAATCAAATTGTCCTAAAAGCTTGTTATGTGCGGCAATTTCACGCTCA 33404 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 || | ||| | | ||||||||| | ||||| ||| ||| | ||||| ||| Sbjct 33405 CCTTGGAATACGCGAATAGTAACTGCGGTTTGTCCGTCTTCGGCAGTGGAGAATAC-CTG 33463 Query 517454 GAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 | ||| | ||||| || || || | |||||||| || | | ||||||| Sbjct 33464 ACTCTTTCTGGTCGGAATCGTAGTATTACGATCAATAAGGCGAGTAAACACACCACCTAA 33523 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 517572 |||||| | ||| || || || || || ||||| | || | || || || || | Sbjct 33524 TGTTTCAATACCGAGGGACAGCGGTGTAACATCCAAAAGAAGAACATCTTTAA------C 33577 Query 517573 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 517632 ||| | ||| ||| || | | | ||||| || |||||| |||||| ||||||| Sbjct 33578 ATC-----GCCCATCAA-AACACCACCCTGAATTGCGGCACCAACGGCAACAACTTCATC 33631 Query 517633 AGGATTAACA 517642 ||| |||||| Sbjct 33632 AGGGTTAACA 33641 >seq3881 Length=49372 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 |||||||||||||| |||| || ||||| || || ||||| || || | | |||| | Sbjct 6478 TTATCAAGACCATATGCAAGGGCTGCAGCTGTAGGCTCATTGATGATACGCTTTACATCA 6537 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||||| || ||| | |||||||| || || || || | || | ||||||||| || || Sbjct 6538 AGACCTGCGATTTTACCTGCATCCTTTGTAGCCTGACGCTGAGCATCGTTAAAGTAAGCC 6597 Query 518288 GGAACAGTAATAACGGCATCAGTTAC 518313 || || |||||||| || || || || Sbjct 6598 GGTACCGTAATAACTGCTTCTGTAAC 6623 >seq320 Length=5459 Score = 86.0 bits (94), Expect = 5e-11 Identities = 190/282 (67%), Gaps = 5/282 (2%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 ||||| || || |||||||| || || | || | ||||| || || | | | Sbjct 3608 ACATCGTGTGTACCACCACCGCAGTCGAATACAACAATCTTCATGTCCTTATTCT---TC 3552 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || ||||||||||| || | || || || ||||| || || | ||| | || ||| Sbjct 3551 TTGTCAAGACCATAGGCGAGTGCTGCTGCCGTTGGCTCGTTGACAATACGACGGACTTTA 3492 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||||| |||||| || || ||||| || || || | |||| |||||||| || || Sbjct 3491 AGACCTGCAATTTCGCCAGCTTCTTTTGTTGCCTGACGCTGTGCGTCGTTAAAGTAGGCT 3432 Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTC 518347 || || || || ||||| || | | ||||| ||||| |||| | || || | ||| Sbjct 3431 GGTACGGTGATGACGGCTTCGCTGATTTCTTGACCAAGATAATCTTCGGCAGTCTTCTTC 3372 Query 518348 ATTTTACTTAA-AATCATTGATGAAATTTGTTCTGGGGAATA 518388 || || || || | ||| | || |||| || ||| ||||| Sbjct 3371 ATCTT-CTGAAGCACCATAGCCGATATTTCTTGTGGCGAATA 3331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780569370823894