Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq398 163 4e-35 seq320 125 9e-24 seq3151 122 1e-22 seq145 107 2e-18 seq4856 93.3 5e-14 seq1740 93.3 5e-14 seq3881 84.2 3e-11 >seq398 Length=3443 Score = 163 bits (180), Expect = 4e-35 Identities = 321/473 (68%), Gaps = 4/473 (1%) Strand=Plus/Minus Query 22362 ATATACATCGGAAGTTGATGGTATAGGTGTGTTGAAAATTCTAGAAGCGATCCGTTTAGC 22421 ||||||| | | | || || |||||||| | ||||| ||||| || ||||| Sbjct 3037 ATATACAGCCAACGCCGACGGCATAGGTGTTCTTCGCATTCTCGAAGCCATACGTTTGCT 2978 Query 22422 AGGTCTAACAAAAACGTGTAAATTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGT 22481 ||| | ||| | | | || |||||||| || ||| || | | || ||||| Sbjct 2977 CGGTTTGACAGAGAAGACACGCTTCTATCAGGCCTCGACAAGCGAATTGTTTGGCAAAGT 2918 Query 22482 AAATGAAACTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGGGGTAGC 22541 | | || || ||||||| |||| ||||| || || || || || ||||| | || || Sbjct 2917 ACAAGAGACACCACAAAGCGAAACCACACCATTCTATCCTCGCTCGCCATACGCAGTTGC 2858 Query 22542 TAAATTGATGGGATATTGGGCGACAGTTAATTATAGAGAATCATACGGTATGTTTGCATG 22601 ||| | || |||||| ||||| || ||| | ||| | ||| |||||||| || Sbjct 2857 AAAACTATACGGCTATTGGATAACAGTCAACTATCGCGAAGCCTACAAAATGTTTGCTTG 2798 Query 22602 CAATGGTATAATGTTCAACCACGAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAA 22661 |||||| ||| | |||||||||||| || | ||| || |||| ||||| ||||| || Sbjct 2797 CAATGGCATACTCTTCAACCACGAAAGCCCCATACGAGGCGAAACATTCGTAACACGTAA 2738 Query 22662 AATAACACTCGGTGTCGC--TAATATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGT 22719 || |||| || ||| || ||| || | || | ||| | | ||||| || Sbjct 2737 GATCACACGCGCTGTAGCCAGAATTGCACTCCA--TTTGCAAGATAAGCTCTACCTCGGC 2680 Query 22720 AACCTAGATGCGAAACGAGATTGGGGTCATGCACGCGATTACGTGAAATGTATGTGGAAA 22779 |||||| | | ||||| || ||||| ||||| || ||||| | |||||| | Sbjct 2679 AACCTATCTTCAAAACGCGACTGGGGACATGCCAAAGACTACGTTCAGGCAATGTGGCAC 2620 Query 22780 ATATTACAACAAGATAAACCGGAAGATTTTGTTATTGCAACAGGCGTAACAAC 22832 || || |||||| | | || ||||| || ||||||||||||||| ||||||| Sbjct 2619 ATCTTGCAACAAAACGAGCCCGAAGACTTCGTTATTGCAACAGGCATAACAAC 2567 >seq320 Length=5459 Score = 125 bits (138), Expect = 9e-24 Identities = 246/355 (69%), Gaps = 9/355 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||| | ||||||||| || |||||| ||| |||||||| | ||| Sbjct 3689 TCGAAGTCGTCGCCACCAAGGTGTGTATCGCCGTCGGTCGATTTAACTTCAAACACACCG 3630 Query 7517 CCTTCAATGTTTAACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | ||| ||| || || || ||||| ||||||||||| ||| || | | | Sbjct 3629 TCACCAA-GTTCAAGTACAGAGACATCGTGTGTACCACCACCGCAGTCGAATACAACAAT 3571 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | ||| | || ||||| || ||||| || |||| || || |||||||| || Sbjct 3570 CTTCAT---GTCCTTATTCTTCTTGTCAAGACCATAGGCGAGTGCTGCTGCCGTTGGCTC 3514 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTC 7694 || | ||||||| | || || || ||||| | ||| || ||||| || || || | Sbjct 3513 GTTGACAATACGACGGACTTTAAGACCTGCAATT-TCGCCAGCTTCTTTTGTTGCCTGAC 3455 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT-ACCG 7753 | || | |||||||||||||| || || || | ||| || || ||| |||||| ||| Sbjct 3454 GCTGTGCGTCGTTAAAGTAGGCTGGTACGGTGATGACGGCTTCGCTGA-TTTCTTGACCA 3396 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTT 7808 ||||| ||| || | | ||||| || ||| ||||| | || || |||| Sbjct 3395 AGATAATCTTCGGCAGTCTTCTTCATCTTCTGAAGCACCATAGCCGATATTTCTT 3341 >seq3151 Length=23168 Score = 122 bits (134), Expect = 1e-22 Identities = 233/340 (69%), Gaps = 5/340 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || ||||| | ||| ||||| || ||||| ||||| |||| ||| Sbjct 19247 ATCGAAGTCGTCGCCACCGAGGTGGGTATCACCATTGGTCGAGAGCACTTCGAAGACACC 19188 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || | | || | | ||||| ||| |||||||| ||||| ||||| || | | | Sbjct 19187 GCCGCCGAAGTCGAGAATCGAAATATCGAACGTACCGCCACCGAGGTCGAAGACGGCAAT 19128 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | || | || | |||| |||| |||||| || | || || ||||| || || Sbjct 19127 CTTCATGTCCTTGT---TAGTCTTGTCGATACCGTAGGCCAGGGCTGCAGCCGTGGGCTC 19071 Query 7636 ATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || | |||||| | ||| || ||||||||||| | | || || || || || || | Sbjct 19070 GTTGACGATACGACGGACA-TTGAGGCCAGCAATCTGTCCGGCCTCCTTGGTGGCCTGAC 19012 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | ||||| ||| | |||||||| || || || | ||| ||||| || || | || || | Sbjct 19011 GCTGCGAGTCGCTGAAGTAGGCGGGCACAGTGATGACGGCGTCGGTCACCTCCTGTCCCA 18952 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 |||| || ||| | | |||||||| ||| ||||| Sbjct 18951 GATAGTCCTCGGCGGTCTTCTTCATTTTCTGAAGCACCAT 18912 >seq145 Length=97958 Score = 107 bits (118), Expect = 2e-18 Identities = 186/269 (69%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||||||||| |||||| ||||| || ||| ||||| |||||||| | ||| Sbjct 34035 TCGAAATCTTCACCGCCCAAGAAAGTATCACCGTTGGTGGCTTTAACTTCAAATACACCA 34094 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | | || | || | |||||||| || |||||||| |||| |||| | | ||| Sbjct 34095 TCACCGATTTCCAAAATGGAAACATCGAATGTACCACCGCCCAAGTCATA---TACAACG 34151 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || || | | ||| ||||| | ||| || || | || || || || || || Sbjct 34152 ATTGTGCCGGTGGC---GTTTTTATCCATACCATAAGCAAGTGCGGCAGCTGTCGGCTCG 34208 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| | | | || || ||||| || | |||||||| || || || ||| Sbjct 34209 TTTATGATACGCAAAACTTCCAAACCCGCAATTTTTCCGGCATCTTTTGTTGCCTGACGT 34268 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 || ||||| || || || ||||| ||||| Sbjct 34269 TGTGAATCATTGAAATATGCCGGAACCGT 34297 Score = 82.4 bits (90), Expect = 1e-10 Identities = 217/325 (67%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 6676 GGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATT 6735 ||||||||||| || || || | ||||| || ||||||| ||| || |||| | Sbjct 33257 GGCCTTATCTTTTGCCGAAACGTTTACGATACCGTTGGCATCAATATCAAAAGTTACTTC 33316 Query 6736 AATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAA-TGTACCAAGTA 6794 |||||| || |||| | ||| || | |||||||| |||||||| ||| | || | Sbjct 33317 AATTTGCGGCATACCGCGCGGAGCAGGAGGAATACCTACCAAATCAAATTGTCCTAA--A 33374 Query 6795 AAC-TGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT 6853 | | |||||| | || | | ||| ||||||| | || ||| || || || | | Sbjct 33375 AGCTTGTTATGTGCGGCAATTTCACGCTCACCTTGGAATACGCGAATAGTAACTGCGGTT 33434 Query 6854 TGATTATCTTGTGCCGTTGAGAAGATTTG-TTCTTTCTTAGATGGAATCGTCGTATTTCT 6912 || |||| || || ||||| | || |||||| | | |||||||| ||||| | Sbjct 33435 TGTCCGTCTTCGGCAGTGGAGAATACCTGACTCTTTC-TGGTCGGAATCGTAGTATTACG 33493 Query 6913 CGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCAC 6972 ||||| | || | | |||||| | ||||| | || || ||||| ||||| || Sbjct 33494 ATCAATAAGGCGAGTAAACACACCACCTAATGTTTCAATACCGAGGGACAGCGGTGTAAC 33553 Query 6973 GTCCAAGAGTAACAGGTCTTGAACA 6997 ||||| || | | |||| |||| Sbjct 33554 ATCCAAAAGAAGAACATCTTTAACA 33578 >seq4856 Length=24448 Score = 93.3 bits (102), Expect = 5e-14 Identities = 223/334 (67%), Gaps = 5/334 (1%) Strand=Plus/Minus Query 11310 GTCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAATTTCAGTTTCATTCTCGAA 11369 ||| || ||||| ||||||||| || | | || | || | |||| || || || Sbjct 14017 GTCAAGGATATCAGCACGGTTTGTCGCCGCAAGAATGATAAGCCCCTTTTCGTTATCAAA 13958 Query 11370 ACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTTGCCGCAAA 11429 || |||||||| || | ||||| | ||| || || ||||| || || | ||| Sbjct 13957 GCCGTCCATTTCGACCAAAAGCTGGTTTAATGTCTGCTCTCGCTCGTCATTGCTAGAAAA 13898 Query 11430 CCCATTCATACTTCTTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGG 11489 || ||||| | ||||| || || || |||||||| || |||||||||||||| || Sbjct 13897 ACCGTTCATTCGGCTTTTT---CCGATTGCGTCAATTTCGTCAATAAAGATAATACAAGG 13841 Query 11490 TTGATTTTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAA 11549 |||||||| ||| | || | |||||||||| | || || || || || || Sbjct 13840 AGCCTTTTCACGAGCCTGCTTGAACAAGTCACGGACTCGGCTGGCACCGACACCAACGAA 13781 Query 11550 CATTTCAACGAACGATG-ACCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTA 11608 ||| || || || || ||| | | || || |||||||| | || || || | Sbjct 13780 CATCTCTACAAAATCTGAACCGCTGATTCT-AAAGAAAGGAACCCCTGCCTCGCCAGCGA 13722 Query 11609 TAGCACGTGCTAAAAGTGTTTTACCTGTACCTGG 11642 |||||| || | ||| |||||||| || || || Sbjct 13721 CAGCACGGGCAAGAAGCGTTTTACCGGTTCCCGG 13688 >seq1740 Length=34420 Score = 93.3 bits (102), Expect = 5e-14 Identities = 199/290 (69%), Gaps = 7/290 (2%) Strand=Plus/Plus Query 6694 TACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCT 6753 |||||| | ||||||||||||||||| ||| || | || | ||| |||||| ||| || Sbjct 4865 TACATTTACAATACCATTTGCATCAATATCAAATGTAACCTCAATCTGTGGTACACCTCT 4924 Query 6754 CGGTGCGGCTGGAATACCCGTTAAATC--AAATGTACCAAGTAAACTGTTATCCGTCGCC 6811 | ||| | ||| ||| || | || || || ||| |||||| | |||||||| | || Sbjct 4925 CATTGCTGGTGGGATA-CCATCAAGTCTGAACTGT-CCAAGTGATTTGTTATCCTTGGCA 4982 Query 6812 TTCTTACGTTCACCTTCATAGACTTTAATTGTC-ACCGCAGGTTGATTATCTTGTGCCGT 6870 || | ||||| | ||| |||| |||| || || | || ||||| ||| || Sbjct 4983 AACTGTCTCTCACCCTGTACGACGTTAA-TGTCAACTGCTGTCTGGTTATCAGCTGCTGT 5041 Query 6871 TGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCAT 6930 ||||| || || ||||| | ||||| || ||||||||| |||| || Sbjct 5042 AGAGAATATCTGACTCTTCTTTGTAGGAATAGTTGTATTTCTCTCGATAAGTCTTGTAGC 5101 Query 6931 AATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGA 6980 |||||||||||| || || | ||| || || ||||| || | ||||| Sbjct 5102 AATACCACCCATTGTCTCAATAGAAAGTGAAAGTGGTGTAACAT-CAAGA 5150 >seq3881 Length=49372 Score = 84.2 bits (92), Expect = 3e-11 Identities = 195/289 (67%), Gaps = 5/289 (2%) Strand=Plus/Plus Query 6694 TACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCT 6753 |||||| | ||||||||||||||||| ||| || | || | ||| |||||| ||| || Sbjct 5577 TACATTTACAATACCATTTGCATCAATATCAAATGTAACCTCAATCTGTGGTACACCTCT 5636 Query 6754 CGGTGCGGCTGGAATACCCGTTAAATC--AAATGTACCAAGTAAACTGTTATCCGTCGCC 6811 | ||| | ||| ||| || | || || || ||| |||||| | |||||||| | || Sbjct 5637 CATTGCTGGTGGGATA-CCATCAAGTCTGAACTGT-CCAAGTGATTTGTTATCCTTAGCA 5694 Query 6812 TTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTT 6871 || | ||||| | || || || || || | ||||| || ||| || Sbjct 5695 AACTGTCTCTCACCCTGTACAACATTGATATCAACTGCTGTCTGATTGTCAGCTGCTGTA 5754 Query 6872 GAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATA 6931 |||||||| || ||||| | ||||| || ||||||||| ||||| || Sbjct 5755 GAGAAGATCTGACTCTTCTTTGTAGGAATAGTTGTATTTCTCTCAATAAGTCTTGTAGCG 5814 Query 6932 ATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGA 6980 ||||||||||| || || | ||| || || ||||| || | ||||| Sbjct 5815 ATACCACCCATTGTCTCAATAGAAAGTGAAAGTGGTGTAACAT-CAAGA 5862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635092318223160