Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq2964 111 1e-19 seq2701 84.2 2e-11 >seq2964 Length=2227 Score = 111 bits (122), Expect = 1e-19 Identities = 257/382 (67%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 53232 ACTGAGAAAGAAGT-CTATGACGCTTGTCAGGGTTTAGAATATGAAATCAATACCATGTT 53290 ||||| |||| ||| ||||||||| | ||| | | ||||||||| | || ||| || Sbjct 1411 ACTGA-AAAGGAGTGCTATGACGCCTTCCAGTCTCTTGAATATGAAGTAAACACCCTGCA 1353 Query 53291 CAACTCTAATGGACAGAGTCCATTTATTACCTTTGGTTTTGGTCTAGGAACTTCTTGGGA 53350 | ||| || || |||| ||| || | || | ||||| ||||| ||||| || ||||| Sbjct 1352 TACCTCCAACGGTCAGACTCCGTTCGTAACTCTCGGTTTCGGTCTGGGAACATCCTGGGA 1293 Query 53351 AGCACGTCTAGTACAGAAAGCAATACTGAAAGTAC-GCATGGATGGTTTAGGTATCAATA 53409 ||||||| | ||||| | || ||||| | || | || | |||| | || |||| Sbjct 1292 GTCACGTCTGATCCAGAAGTCTATTCTGAA-GAACAGAATTGCTGGTCTCGGCCGCAATC 1234 Query 53410 AACGTACAGCTATCTTCCCGAAACTGGTATTTGTACTTCGTGATGGCGTAAATATGAAAC 53469 | | || || | ||||| || ||||| |||| | || || | || ||| Sbjct 1233 ACAGAACTGCGGTTTTCCCTAAGCTGGTGTTTGCCATCAAGGAGGGACTGAACCGTAAAG 1174 Query 53470 CAGGAGATGTTAATTATGACATCAAGAAGTTAGCTATGAAATGTACTGCTGAACGTATGT 53529 || ||| ||| || || ||||||||| | ||| | |||| | | | | |||| Sbjct 1173 AGGGTGATCCTAACTACGATATCAAGAAGCTGGCTCTTGAATGCGCCTCCAAGAGAATGT 1114 Query 53530 ATCCAGATTATATCAGCTATGATAAGGTTGTGGAAGTTACTGGTGACTATAAAGTTTCTA 53589 |||| ||| | | | ||| ||| |||||||| | ||||| ||| | || | | | Sbjct 1113 ATCCGGATATTCTGAACTACGATCAGGTTGTGAAGGTTACCGGTTCATTCAAGACTCCGA 1054 Query 53590 TGGGCTGCCGTTCATTCCTAGC 53611 |||||||||| |||||||| || Sbjct 1053 TGGGCTGCCGCTCATTCCTCGC 1032 >seq2701 Length=6067 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 27375 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 27434 |||||| | |||||| || || | | | ||| || | ||| ||||| || | | Sbjct 5367 ATTACAGCTTCTGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAG 5308 Query 27435 CGTTAAATCGAACAGCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGAT 27494 ||| || || |||||||| || || |||||||| |||| | ||||||||||||||| | Sbjct 5307 AGTTGAAACGTACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGT 5248 Query 27495 GTTTCTGTGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCAC 27554 ||| | |||||| | || || | | | | || || ||||| || |||||||| | Sbjct 5247 GTTCCATTGCATCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGC 5188 Query 27555 CTTC 27558 |||| Sbjct 5187 CTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378574872357368