Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_015274.1 Length=56506 Score E Sequences producing significant alignments: (Bits) Value seq3808 147 8e-31 seq118 122 3e-23 seq3880 120 1e-22 seq22 120 1e-22 seq2490 109 2e-19 seq1922 109 2e-19 seq4366 96.9 1e-15 seq4335 95.1 4e-15 seq3074 95.1 4e-15 seq585 91.5 5e-14 >seq3808 Length=18864 Score = 147 bits (162), Expect = 8e-31 Identities = 237/338 (70%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 211 TGACTATAATCCAGACGTCCTTGAAACTTTCCCTAACAAACATCCTGAAAATAATTACCT 270 |||||| ||| |||||||| || |||||| ||| |||||||| || | ||| Sbjct 2956 TGACTACGCTCCCGACGTCCTCGAGACTTTCGAGAACCGCCATCCTGACAACGACTACTG 2897 Query 271 AGTAACATTTGACGGATATGAATTCACTTCCCTTTGCCCTAAAACAGGACAGCCTGACTT 330 ||| || || | |||||||||||| || ||||| | |||||| ||||||||||| Sbjct 2896 GGTACGCTTCAACTGCCCTGAATTCACTTCACTATGCCCAATAACAGGCCAGCCTGACTT 2837 Query 331 CGCGAATGTTTTCATTAGTTACATTCCAAACGAAAAGATGGTTGAATCTAAATCATTGAA 390 || | | || | || | || ||| |||||||| || || || ||||| Sbjct 2836 TGCCGAGATACGTATCAACTATCTGCCTGGCGAGCGTATGGTTGAGTCCAAGTCCTTGAA 2777 Query 391 ATTGTACTTATTCAGTTTCCGTAACCACGGTGACTTCCACGAAGATTGCATGAACATTAT 450 | | || | ||||| ||||| ||||| || ||||||||||| || ||| | |||| || Sbjct 2776 ACTATATCTCTTCAGCTTCCGCAACCATGGCGACTTCCACGAGGACTGCGTCAACACGAT 2717 Query 451 TTTGAATGA-CTTGTATGAATTGATGGAACCTAAGTACATTGAAGTCATGGGCCTATTCA 509 | |||| || ||| || | | ||||| || |||||||| ||||||| ||| | |||| Sbjct 2716 TATGAAAGACCTTATACG-CCTCATGGACCCCAAGTACATCGAAGTCACAGGCATCTTCA 2658 Query 510 CTCCTCGTGGTGGAATTTCAATTTACCCATTCGTCAAC 547 | || || ||||| || || ||||||| || |||| Sbjct 2657 CGCCACGCGGTGGCATCAGCATCTACCCATACGCCAAC 2620 >seq118 Length=108849 Score = 122 bits (134), Expect = 3e-23 Identities = 185/260 (71%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 290 GAATTCACTTCCCTTTGCCCTAAAACAGGACAGCCTGACTTCGCGAATGTTTTCATTAGT 349 || |||||||| ||||| || | || || ||||||||||| || | || || | Sbjct 2663 GAGTTCACTTCTCTTTGTCCCATCACGGGGCAGCCTGACTTTGCCGAGATTCAAATCCGC 2722 Query 350 TACATTCCAAACGAAAAGATGGTTGA-ATCTAAA-TCATTGAAATTGTACTTATTCAGTT 407 |||||||| | | || ||||| || | | | | || ||||| | || | ||| | Sbjct 2723 TACATTCCGGATGTGAAAATGGTGGAGAGCAAGAGTC--TGAAACTCTATCTTTTCTCCT 2780 Query 408 TCCGTAACCACGGTGACTTCCACGAAGATTGCATGAACATTATTTTGAATGACTTGTATG 467 | || |||||||| |||||||||||||| ||| |||||| ||| |||| |||||| | Sbjct 2781 TTCGCAACCACGGAGACTTCCACGAAGACTGCGTGAACAAGATTATGAAGGACTTGAAAA 2840 Query 468 AATTGATGGAACCTAAGTACATTGAAGTCATGGGCCTATTCACTCCTCGTGGTGGAATTT 527 | ||||| || || || || || ||| | || || ||||| || || || || |||| Sbjct 2841 GCCTTATGGACCCGAAATATATAGAGGTCGTCGGGCTGTTCACGCCCCGCGGCGGCATTT 2900 Query 528 CAATTTACCCATTCGTCAAC 547 | |||||||| |||| |||| Sbjct 2901 CGATTTACCCCTTCGCCAAC 2920 >seq3880 Length=52851 Score = 120 bits (132), Expect = 1e-22 Identities = 210/303 (69%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 230 CTTGAAACTTTCCCTAACAAACATCCTGAAAATAATTACCTAGTAACATTTGACGGATAT 289 ||| |||| || |||||||||||| || ||| | || | || | ||| | | | Sbjct 14681 CTTCAAACATTTATTAACAAACATCCGGAGAATGACTATTTTGTTAAGTTTAATTGCCCT 14740 Query 290 GAATTCACTTCCCTTTGCCCTAAAACAGGACAGCCTGACTTCGCGAATGTTTTCATTAGT 349 || || || || ||||| || | ||||| ||||| || || || ||| || | ||| | Sbjct 14741 GAGTTTACATCGCTTTGTCCAATTACAGGGCAGCCGGATTTTGCAAATATTATTATTTCT 14800 Query 350 TACATTCCAAACGAAAAGATGGTTGAATCTAAATCATTGAAATTGTACTTATTCAGTTTC 409 || | || || || ||||| || ||||| | ||||| || || ||||||||| Sbjct 14801 TATGTGCCCGGTGAGAAAATGGTAGAGAGCAAATCTCTAAAATTATATTTGTTCAGTTTC 14860 Query 410 CGTAACCACGGTGACTTCCACGAAGATTGCATGAACATTATTTTGAATGACTTGTATGAA 469 ||||| || || || ||||| || ||||| | || |||||| |||| || || || || Sbjct 14861 CGTAATCATGGAGATTTCCATGAGGATTGTGTTAATATTATTATGAAGGA-TTTAATAAA 14919 Query 470 -TTGATGGAACCTAAGTACATTGAAGTCATGGGCCTATTCACTCCTCGTGGTGGAATTTC 528 | ||||| ||||| || ||||| || |||| ||| || || | |||||||| || Sbjct 14920 GCTTATGGATCCTAAATATATTGAGGTGTGGGGCAAATTTACACCGAGAGGTGGAATATC 14979 Query 529 AAT 531 ||| Sbjct 14980 AAT 14982 >seq22 Length=43999 Score = 120 bits (132), Expect = 1e-22 Identities = 238/350 (68%), Gaps = 2/350 (1%) Strand=Plus/Plus Query 194 GACACCAAATACGATTATGACTATAATCCAGACGTCCTTGAAACTTTCCCTAACAAACAT 253 || ||| |||| | | |||||| |||||| || ||||| ||||| ||| ||||| Sbjct 40446 GAGACCGAATATAAAAACGACTATGCTCCAGAAGTACTTGAGACTTTTGAGAACCAACAT 40505 Query 254 CCTGAAAATAATTACCTAGTAACATTTGACGGATATGAATTCACTTCCCTTTGCCCTAAA 313 || || ||| |||| ||| ||| || | || ||||| || || || |||| Sbjct 40506 CCCGATAATGATTATTGGGTACAATTCAACTGTCCAGAGTTCACCTCGCTATGTCCTATT 40565 Query 314 ACAGGACAGCCTGACTTCGCGAATGTTTTCATTAGTTACATTCCAAACGAAAAGATGGTT 373 || || || || ||||| || | | || || || || || || ||||| Sbjct 40566 ACTGGTCAACCAGACTTTGCAGAAATAAAGATACTCTATATCCCCGACAAACGAATGGTA 40625 Query 374 GAATCTAAATCATTGAAATTGTACTTATTCAGTTTCCGTAACCACGGTGACTTCCACGAA 433 || |||| ||||||| ||| ||||| ||| || |||||||| ||||| || ||| Sbjct 40626 GAGAGTAAAAGTCTGAAATTATACCTATTCTCTTTTCGCAACCACGGAGACTTTCATGAA 40685 Query 434 GATTGCATGAACATTATTTTGAATGACTTG-TATGAATTGATGGAACCTAAGTACATTGA 492 ||||| | ||||| ||| |||| ||||| | || || ||||| || ||||||||||| Sbjct 40686 GATTGTGTAAACATCATTATGAAGGACTTAATCCGACTT-ATGGAGCCAAAGTACATTGA 40744 Query 493 AGTCATGGGCCTATTCACTCCTCGTGGTGGAATTTCAATTTACCCATTCG 542 | | || |||| |||||||| ||||| || ||||| |||| || Sbjct 40745 GATTACTGGTATATTTCTCCCTCGTGGCGGAATATCTATTTATCCATACG 40794 >seq2490 Length=10812 Score = 109 bits (120), Expect = 2e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 290 GAATTCACTTCCCTTTGCCCTAAAACAGGACAGCCTGACTTCGCGAATGTTTTCATTAGT 349 ||||| || |||||||||| | || || ||||| ||||| || | | ||| | Sbjct 6229 GAATTTACCACCCTTTGCCCCATCACGGGCCAGCCGGACTTTGCCGAAATCCGCATCGGC 6170 Query 350 TACATTCCAAACGAAAAGATGGTTGAATCTAAATCATTGAAATTGTACTTATTCAGTTTC 409 || | || || | || ||||| ||||| || || | || |||| | ||||||||| Sbjct 6169 TATGTGCCGGACAAGAAAATGGTGGAATCCAAGTCCCTCAAGCTGTATCTGTTCAGTTTC 6110 Query 410 CGTAACCACGGTGACTTCCACGAAGATTGCATGAACATTATTTTGAATGACTTGTATGAA 469 || | |||| ||||||||||| || ||| |||||| || |||| ||| | || || Sbjct 6109 CGCTCCAACGGAGACTTCCACGAGGACTGCGTGAACACCATCATGAAGGACCTC-ATCAA 6051 Query 470 T-TGATGGAACCTAAGTACATTGAAGTCATGGGCCTATTCACTCCTCGTGGTGGAATTTC 528 ||||||| || ||||||||||| |||| ||| | || || || || || || || || Sbjct 6050 GCTGATGGATCCCAAGTACATTGAGGTCACCGGCTTCTTTACGCCCCGCGGCGGCATCTC 5991 Query 529 AATTTACCC 537 || ||||| Sbjct 5990 CATCTACCC 5982 >seq1922 Length=197193 Score = 109 bits (120), Expect = 2e-19 Identities = 221/328 (67%), Gaps = 0/328 (0%) Strand=Plus/Plus Query 212 GACTATAATCCAGACGTCCTTGAAACTTTCCCTAACAAACATCCTGAAAATAATTACCTA 271 || |||| ||| || | ||||||| ||| ||||| |||| ||| || | ||| Sbjct 77047 GATTATAGTCCTGAGCTTCTTGAAAGTTTTGAGAACAAGCATCAGGAACATGACTACTGG 77106 Query 272 GTAACATTTGACGGATATGAATTCACTTCCCTTTGCCCTAAAACAGGACAGCCTGACTTC 331 ||| ||| | | ||||||||| | ||||| | |||||| || || ||||| Sbjct 77107 GTAGAATTAAATTGTCCCGAATTCACTAGTTTATGCCCAATAACAGGGCAACCAGACTTT 77166 Query 332 GCGAATGTTTTCATTAGTTACATTCCAAACGAAAAGATGGTTGAATCTAAATCATTGAAA 391 || | | ||| | ||||| ||| ||| | ||||| || || |||||| Sbjct 77167 GCAGAAATCCACATCAAATACATACCAGACGTACGAATGGTAGAGAGCAAGAGTTTGAAA 77226 Query 392 TTGTACTTATTCAGTTTCCGTAACCACGGTGACTTCCACGAAGATTGCATGAACATTATT 451 || || ||||||||||||| || || ||||| || || |||||||| | || | || Sbjct 77227 TTATATCTATTCAGTTTCCGCAATCATGGTGATTTTCATGAAGATTGTGTAAATACCATA 77286 Query 452 TTGAATGACTTGTATGAATTGATGGAACCTAAGTACATTGAAGTCATGGGCCTATTCACT 511 |||| ||||| | | || |||||||| || || || || || | ||| | || || Sbjct 77287 ATGAAAGACTTAATTAACTTAATGGAACCAAAATATATAGAGGTAACGGGGTTGTTTACG 77346 Query 512 CCTCGTGGTGGAATTTCAATTTACCCAT 539 || |||||||| ||||| || || |||| Sbjct 77347 CCACGTGGTGGCATTTCCATATATCCAT 77374 >seq4366 Length=88272 Score = 96.9 bits (106), Expect = 1e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 387 TGAAATTGTACTTATTCAGTTTCCGTAACCACGGTGACTTCCACGAAGATTGCATGAACA 446 |||| | ||| | ||||||| || || || ||||| || || || || ||| |||| | Sbjct 45901 TGAAGCTCTACCTGTTCAGTTATCGGAATCATGGTGATTTTCATGAGGACTGCGTGAATA 45960 Query 447 TTATTTTGAATGACTTGTATGAATTGATGGAACCTAAGTACATTGAAGTCATGGGCCTAT 506 ||| |||| ||| || || ||||||| || || || ||||| || | |||| | | Sbjct 45961 AGATTATGAAAGACCTGATTGCCCTGATGGATCCGAAATATATTGAGGTGACGGGCATCT 46020 Query 507 TCACTCCTCGTGGTGGAATTTCAATTTACCC 537 |||||||||||||||| ||||| || ||||| Sbjct 46021 TCACTCCTCGTGGTGGTATTTCCATCTACCC 46051 >seq4335 Length=9722 Score = 95.1 bits (104), Expect = 4e-15 Identities = 175/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 290 GAATTCACTTCCCTTTGCCCTAAAACAGGACAGCCTGACTTCGCGAATGTTTTCATTAGT 349 |||||||| ||||||| || | ||| || |||||||||||||| | | ||| || Sbjct 620 GAATTCACCACCCTTTGTCCCATAACCGGGCAGCCTGACTTCGCCGAAATCCGCATAAGC 679 Query 350 TACATTCCAAACGAAAAGATGGTTGAATCTAAATCATTGAAATTGTACTTATTCAGTTTC 409 ||||| || ||| | |||||| ||| || | || | || | ||| |||| Sbjct 680 TACATCCCCGACGCCAGGATGGTGGAAAGCAAGAGCCTCAAGCTCTATCTGTTCTCTTTC 739 Query 410 CGTAACCACGGTGACTTCCACGAAGATTGCATGAACATTATTTTGAATGACTTGTATGAA 469 || |||||||| ||||||||||| || ||| | |||| || |||| ||| | | Sbjct 740 CGCAACCACGGGGACTTCCACGAGGACTGCGTCAACACCATCATGAAAGACCTCATCGCC 799 Query 470 TTGATGGAACCTAAGTACATTGAAGTCATGGGCCTATTCACTCCTCGTGGTGGAATTTCA 529 | ||||| || |||||||| || |||| || || || || || || || || || Sbjct 800 CTCATGGACCCGAAGTACATAGAGGTCACCGGGCTCTTTACCCCACGCGGAGGCATAAGT 859 Query 530 ATTTACCCATTCGTCAA 546 ||||| || | || ||| Sbjct 860 ATTTATCCTTACGCCAA 876 >seq3074 Length=20260 Score = 95.1 bits (104), Expect = 4e-15 Identities = 228/339 (67%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 212 GACTATAATCCAGACGTCCTTGAAACTTTCCCTAACAAACATCCTGAAAATAATTACCTA 271 |||||| ||| || || ||||| | |||| ||||||||||| ||||| | || Sbjct 16297 GACTATGCTCCTGAGGTGCTTGAGTCATTCCAGAACAAACATCCGGAAAACGACTATTGG 16356 Query 272 GTAACATTTGACGGATATGAATTCACTTCCCTTTGCCCTAAAACAGGACAGCCTGACTTC 331 ||| || || | || ||||| || ||||||| || || ||||||||||| Sbjct 16357 GTACGTTTCAACTGCCCGGAGTTCACCAGTCTGTGCCCTATCACCGGGCAGCCTGACTTT 16416 Query 332 GCGAATGTTTTCATTAGTTACATTCCAAACGAAAAGATGGTTGA-ATCTAAA-TCATTGA 389 ||| | | || |||||||| || | ||||| || | | | | || ||| Sbjct 16417 GCGGAGATACGTATCTCGTACATTCCTGACCAGCGAATGGTGGAGAGCAAGAGTC--TGA 16474 Query 390 AATTGTACTTATTCAGTTTCCGTAACCACGGTGACTTCCACGAAGATTGCATGAACATTA 449 | | ||| | ||| ||||| ||||| ||||||||||| || || || | |||| | Sbjct 16475 AGCTTTACCTCTTCTCGTTCCGCAACCATGGTGACTTCCATGAGGACTGTGTCAACAAAA 16534 Query 450 TTTTGAATGACTTGTATGAA-TTGATGGAACCTAAGTACATTGAAGTCATGGGCCTATTC 508 | |||| ||| | || || || ||||| || ||||||||||| || | |||| | ||| Sbjct 16535 TCATGAAAGACCT-CATCAAGTTAATGGACCCAAAGTACATTGAGGTGACGGGCTTCTTC 16593 Query 509 ACTCCTCGTGGTGGAATTTCAATTTACCCATTCGTCAAC 547 ||||| || || || || || | ||||| || |||| Sbjct 16594 ACTCCGCGAGGCGGCATCAACATCTTCCCATACGCCAAC 16632 >seq585 Length=6628 Score = 91.5 bits (100), Expect = 5e-14 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 365 AAGATGGTTGA-ATCTAAATCATTGAAATTGTACTTATTCAGTTTCCGTAACCACGGTGA 423 |||||||| || | | | | | |||||| | || | ||||||||||| | || || || Sbjct 4351 AAGATGGTGGAGAGCAAGAGC-TTGAAACTCTATCTTTTCAGTTTCCGCAGTCATGGCGA 4293 Query 424 CTTCCACGAAGATTGCATGAACATTATTTTGAATGACTTGTATGAATTGATGGAACCTAA 483 ||||| || || ||| |||||| ||| |||| ||| || | |||||||| ||||| Sbjct 4292 TTTCCATGAGGACTGCGTGAACAAGATTATGAAGGACCTGATTCGCTTGATGGACCCTAA 4233 Query 484 GTACATTGAAGTCATGGGCCTATTCACTCCTCGTGGTGGAAT 525 || || || || | ||| || |||||||| ||||| ||||| Sbjct 4232 ATATATAGAGGTAACGGGACTGTTCACTCCCCGTGGAGGAAT 4191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180686658647384