Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq2216 87.8 2e-12 seq152 87.8 2e-12 seq5021 82.4 9e-11 >seq2216 Length=5131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 140961 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGAGTCC 141016 ||||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct 4445 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGCCGGAGGTTCGAGTCC 4500 >seq152 Length=50040 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 22316 GTGGCGGAATCGGTAGACGCACCAGACTTAAAATCTGTTGAGAATTATCTCGTGGGGGTT 22375 |||||||||||||||||||| |||||||||||||||||| || ||||| |||| | ||| Sbjct 8436 GTGGCGGAATCGGTAGACGCTGCAGACTTAAAATCTGTTGGGATTTATCCCGTGCGAGTT 8495 Query 22376 CAAGTC 22381 |||||| Sbjct 8496 CAAGTC 8501 >seq5021 Length=25336 Score = 82.4 bits (90), Expect = 9e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 140947 TTTATTTGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAG 141006 |||||||||||| ||||||||||||| ||||||||||| || ||| |||| ||||| | Sbjct 1399 TTTATTTGACTCCGTAGCTCAGTTGG-TAGAGCAACTGACTCTTAATCAGTGGGTCGAGG 1341 Query 141007 GTTCGAGTCCTACCTGGGTC 141026 ||||||| || || ||||| Sbjct 1340 GTTCGAGCCCCTCCGGGGTC 1321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610357894833960