Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_015457.1 Length=165919 Score E Sequences producing significant alignments: (Bits) Value seq2964 122 9e-23 seq2701 98.7 1e-15 >seq2964 Length=2227 Score = 122 bits (134), Expect = 9e-23 Identities = 615/959 (64%), Gaps = 36/959 (4%) Strand=Plus/Plus Query 41479 GCGATGCGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 41538 ||||| ||||| |||||||| |||| ||||| ||||| ||||| || || | || | | Sbjct 951 GCGATACGAGGCAGATTCAGACTTACCACACCCAGATTGTTACGGCCGTCGTGGATCTGA 1010 Query 41539 TTACCAGTCGAATCTTTCCATACGCT-CAAGAAACTA-CGGCAACCCATTGGAGAAACAG 41596 ||| || || | |||||| | || || | ||||| ||||| |||| | Sbjct 1011 ACACCGTTC---TCCT--CATACGGGGCGAGGAATGAGCGGCAGCCCATCGGAGT--CTT 1063 Query 41597 GAACAGATGAACCAGTGATAGCTTTAT----TGTTCTTAGCCGAAATGATGTCAGGATAC 41652 ||| |||||| || | ||| | || || ||| | | || || |||||| Sbjct 1064 GAA----TGAACCGGTAAC--CTTCACAACCTGATCGTAGTTCAGA--ATATCCGGATAC 1115 Query 41653 ATTCTTTTGCTTGCGCATTCTAAAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTA 41712 ||||| ||| |||||||| | ||| |||| ||| ||||| ||||| ||||| | | Sbjct 1116 ATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTAGGATCACCCTCT 1175 Query 41713 TAAAGATTAACACCTTCTTCAACGAACATAACAAGTTTAGGGAAAATAGGAGTTATCCCG 41772 | | | || | || || | | | | || || |||||||||| | |||| | Sbjct 1176 TTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAACCGCAGTTCTGTGA 1235 Query 41773 TCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTC 41832 | || || ||||| ||| | || |||||||| | ||||| |||| ||| | Sbjct 1236 TTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGATCAGACGTGACTCC 1295 Query 41833 CAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGCCCGTTTGAACTAAAA 41892 ||| |||||| ||| || | ||||| || || || || ||||| || || Sbjct 1296 CAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACCGTTGGAGGTATGC 1355 Query 41893 AGAGTATTTACTTCATATTCATAAGCTTGAAATGCATCGTATACGTCTTTTTCTGTTTTA 41952 || || ||||||||||||||| || || || || || || || ||||| || Sbjct 1356 AGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCCTTTTCAGTACGG 1415 Query 41953 GATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG-CATCTTC-AATATGTT 42010 | | | ||| | | || ||||| || ||||| | || | ||||||| ||| | Sbjct 1416 GCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATCTTCTGATACTTC 1475 Query 42011 TTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG-CAAAAGTCGTT 42069 || | | | ||||||| || | ||| || | ||| ||| | | || || Sbjct 1476 ATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCGGTTGATGGTTGTA 1532 Query 42070 CCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACA 42129 |||||||| |||| |||||||| || | || ||||| ||| || || || | Sbjct 1533 CCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAACCGCGGTTGCGGTA 1592 Query 42130 CCGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAATCCGTTCTCAAGCATT 42189 | |||||| ||||| | ||| || | |||||||| | ||| || ||| || |||||| Sbjct 1593 CTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACCGCGTTCCAGCATT 1652 Query 42190 CCTTTTAAATCTACTAAACAGCAATTAGTAAAT--GGAAGAGCAGGGGAATAATCAATAT 42247 || | ||| | | | || | | | | || |||||| | || ||||| || | || Sbjct 1653 CCGCCGACATCGA-TCAGCATACAGTTGAACATCGGGAAGAAC-GGTGAATAGTCGAGAT 1710 Query 42248 CATGGAAATGGATAATTCCGCTTTCATGTGCTTTCATAA-TAAAAGACGGGACCAT---A 42303 | || |||||||| || |||||||| ||| ||| || | || || | ||| Sbjct 1711 CGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA-GGAAGCATGTGC 1769 Query 42304 TTTTTGGCAATGTGCTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAACA 42363 | ||| ||| ||| | |||||||| || | |||||| || || || |||| ||| Sbjct 1770 TGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTGGGTCGGAATAACC 1829 Query 42364 CGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTTATGAATCAATCC 42422 || || || ||||||||||| | || ||| ||| | | || |||| ||| Sbjct 1830 TTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTGATCGATCAGTCC 1888 >seq2701 Length=6067 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 59800 ATTACAGGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 59859 ||||||| ||| ||| || || | | | ||| || |||||||||| || | || Sbjct 5367 ATTACAGCTTCTGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAG 5308 Query 59860 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 59919 |||| || || || |||||||| || |||||||| ||||| ||||||||||| || | Sbjct 5307 AGTTGAAACGTACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGT 5248 Query 59920 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCAC 59979 | | | |||||| ||| ||||| | |||||||| || ||||| || ||||| | Sbjct 5247 GTTCCATTGCATCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGC 5188 Query 59980 CTTC 59983 |||| Sbjct 5187 CTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530778967319160