Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq320 125 6e-23 seq4549 120 2e-21 seq145 120 2e-21 seq154 118 9e-21 seq1740 111 1e-18 seq3881 105 5e-17 seq2640 102 7e-16 seq1931 102 7e-16 seq3027 91.5 1e-12 >seq320 Length=5459 Score = 125 bits (138), Expect = 6e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 550318 TTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTT 550377 ||| ||| || |||| || ||||||| | ||| ||||| | || ||| | || Sbjct 3333 TTCGCCACAAGAAATATCGGCTATGGTGCTTCAGAAGATGAAGAAGACTGCCGAAGATTA 3392 Query 550378 TGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 | ||||||||||| | | || || || || || |||||||| || ||||| ||| |||| Sbjct 3393 TCTTGGTCAAGAAATCAGCGAAGCCGTCATCACCGTACCAGCCTACTTTAACGACGCACA 3452 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||| || || ||||| ||||| ||||| || ||||| || | ||||||| |||| Sbjct 3453 GCGTCAGGCAACAAAAGAAGCTGGCGAAATTGCAGGTCTTAAAGTCCGTCGTATTGTCAA 3512 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || || || || || ||||| || ||||| ||||| || Sbjct 3513 CGAGCCAACGGCAGCAGCACTCGCCTATGGTCTTGACAA 3551 >seq4549 Length=53065 Score = 120 bits (132), Expect = 2e-21 Identities = 210/302 (70%), Gaps = 8/302 (3%) Strand=Plus/Plus Query 552292 TTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGA 552351 || ||||| | || ||||| || || || || ||| | ||||| | || || || | Sbjct 45380 TTTTACTTTTGGACGTTACACCACTTTCACTCGGTATTGAAACTTTGGGCGGCGTTTGCA 45439 Query 552352 CTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGT 552411 | || |||| || | ||||| || |||||| | ||||||| | || ||||| || Sbjct 45440 CAAAAATTATTGAACGCAATACAACCATTCCTACTCAAAAATCACAAGTCTTTTCAACTG 45499 Query 552412 ATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTA 552471 | || |||||| | ||| |||||| |||| | || |||||| || | | Sbjct 45500 CGGCTGACAATCAATCAAGCGTTGAAATTCACGTTTTGCAGGGTGAAAGAGAAATGGCAG 45559 Query 552472 AAGATAATAATCAACT-TGGTACTTTT---AATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 | |||||| |||| | | || ||| | ||| || |||||| ||||| || ||| Sbjct 45560 CCGGTAATAA--AACTCTCGGACGTTTTGTACTTTC--AGATATTCCGCCTGCGCCGCGT 45615 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 ||||| |||||||||||||||||||||||||| ||||| || || ||| | ||||| || Sbjct 45616 GGAGTTCCGCAAATTGAAGTTACTTTCGATATTGATGCTAACGGTATTGTTAATGTTTCT 45675 Query 552588 GC 552589 || Sbjct 45676 GC 45677 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || || || ||||||||| ||||||||||| || ||||| || Sbjct 44641 GCGGTTATCACTGTTCCGGCTTACTTTAATGACAGTCAACGTCAAGCAACAAAAGACGCG 44700 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||||| || ||| | ||| | | |||||||| ||||| || || ||||| ||| Sbjct 44701 GGCAAAATTGCAGGGCTTGAAGTTTTGAGAATTATCAACGAACCGACGGCGGCTGCGCTT 44760 Query 550520 GCATATGGACTTGATAAA 550537 || || || | |||||| Sbjct 44761 GCTTACGGCTTAGATAAA 44778 >seq145 Length=97958 Score = 120 bits (132), Expect = 2e-21 Identities = 251/373 (67%), Gaps = 12/373 (3%) Strand=Plus/Minus Query 552202 AAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTT 552261 || ||||||| || ||||| | ||||||| ||||||||||||||| | | | || || Sbjct 33645 AAGGTGTTAACCCTGATGAAGTTGTTGCCGTTGGTGCCGCAATTCAGGGTGGTGTT-TTG 33587 Query 552262 CTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321 ||| | |||| ||| || || | ||| | |||||||| || || || | Sbjct 33586 ATGGGC-----GATGTTAAAG------ATGTTCTTCTTTTGGATGTTACACCGCTGTCCC 33538 Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381 | ||| | |||||| | || ||| | | ||| ||||| ||| | |||||||| |||| Sbjct 33537 TCGGTATTGAAACATTAGGTGGTGTGTTTACTCGCCTTATTGATCGTAATACTACGATTC 33478 Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441 | | ||| || ||||| || || ||| ||||| || ||||| |||| Sbjct 33477 CGACCAGAAAGAGTCAGGTATTCTCCACTGCCGAAGACGGACAAACCGCAGTTACTATTC 33418 Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATT 552501 | || |||| || | || | | | |||| || | | || ||| ||| Sbjct 33417 GCGTATTCCAAGGTGAGCGTGAAATTGCCGCACATAACAAGCTTTTAGGACAATTTGATT 33358 Query 552502 TAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCG 552561 | | |||||||||||||||||| || || | |||||||||||||| ||||| ||||| | Sbjct 33357 TGGTAGGTATTCCTCCTGCTCCGCGCGGTATGCCGCAAATTGAAGTAACTTTTGATATTG 33298 Query 552562 ATGCCAATGGAAT 552574 ||||||| || || Sbjct 33297 ATGCCAACGGTAT 33285 Score = 100 bits (110), Expect = 2e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || ||||| || || || |||||||| ||||| ||||||||||| || || |||||||| Sbjct 34306 GCCGTAATTACGGTTCCGGCATATTTCAATGATTCACAACGTCAGGCAACAAAAGATGCC 34247 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||| ||||| || | | ||| | ||||| || || || || || ||||| |||||| Sbjct 34246 GGAAAAATTGCGGGTTTGGAAGTTTTGCGTATCATAAACGAGCCGACAGCTGCCGCACTT 34187 Query 550520 GCATATGGACTTGATAAA 550537 || ||||| | |||||| Sbjct 34186 GCTTATGGTATGGATAAA 34169 >seq154 Length=36677 Score = 118 bits (130), Expect = 9e-21 Identities = 148/202 (73%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 368794 GTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTT 368853 ||||| || || ||||||||||| || || |||||||||| ||| |||||||||| ||| Sbjct 28161 GTTTTCGACTGTTGGTTTGAATCCGGCTCAATGCCTTATGCACAAGTACATTATCCGTTT 28102 Query 368854 GATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATCA 368913 || ||| | ||| ||||| ||| ||| | |||||||||| | ||| || Sbjct 28101 GAAAACAAAGAATGGTTTGAAAAT------CATTTTCCGGCTGATTTTATTGTTGAAGCA 28048 Query 368914 ATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGAT 368973 ||||| ||||| || |||||||| |||||| || ||||| || |||||| | | || Sbjct 28047 ATTGACCAAACTCGCGGTTGGTTCTATACCTTAACCGTATTGTCAACAGCTTTGCACAAT 27988 Query 368974 AAACCGGCTTTTAA-AAATGTA 368994 ||||| ||||| || |||| Sbjct 27987 CGTCCGGCATTTAAGAACTGTA 27966 >seq1740 Length=34420 Score = 111 bits (122), Expect = 1e-18 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 550386 AAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 || ||||||| || || || || |||||||| || || || ||||| |||| ||||| | Sbjct 5916 AAAAAGTTACAGAGGCTGTTATCACTGTACCTGCTTACTTCAATGATGCACAGCGTCAGG 5857 Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505 |||| |||||||| || || || |||||| |||| ||||| ||||| || |||| Sbjct 5856 CTACAAAAGATGCCGGCAAGATCGCAGGACTTGATGTAAAGCGTATCATCAACGAGCCTA 5797 Query 550506 CTGCTGCTGCACTTGCATATGGACTTGATAA 550536 | || || || ||||||||||| ||||| || Sbjct 5796 CAGCAGCAGCTCTTGCATATGGTCTTGACAA 5766 >seq3881 Length=49372 Score = 105 bits (116), Expect = 5e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| || ||||| || || ||||| || || ||||| || | || ||||| ||||| Sbjct 6623 GTTACAGAAGCAGTTATTACGGTACCGGCTTACTTTAACGATGCTCAGCGTCAGGCTACA 6564 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || ||||| || || || || ||| |||| ||||| |||||||| ||||| ||| Sbjct 6563 AAGGATGCAGGTAAAATCGCAGGTCTTGATGTAAAGCGTATCATCAATGAGCCTACAGCT 6504 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 || || ||||||||||| |||||||| Sbjct 6503 GCAGCCCTTGCATATGGTCTTGATAA 6478 >seq2640 Length=8223 Score = 102 bits (112), Expect = 7e-16 Identities = 198/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 ||||| ||||| || || | ||| | ||||| || ||||| ||| | | || || Sbjct 6166 GATGTAACTCCGCTTTCATTAGGTATTGAAACCCAGGGCGGTATCATGTCAACCCTGATT 6107 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 || | ||||| ||||||||| || || || | || | || || | ||| || Sbjct 6106 GAAAAGAATACAACTATTCCTACCAAGAAGTCACAGGTTTACTCAACAGCTGAAGACAAC 6047 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAG-AT-AATA 552480 || ||||||| |||||||| | | | || ||||||||| || ||| || || | Sbjct 6046 CAGCCTGCTGTAACAATTCACGTACTGCAGGGTGAAAGAAAA--CAGGCAAGCATGAACA 5989 Query 552481 ATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAA 552540 | || || || || | ||||||||| |||||||||| || ||||| || || | Sbjct 5988 AGTCTCTCGGACAGTTCAACCTTGAAGGTATTGCTCCTGCTCCACGCGGAGTTCCTCAGA 5929 Query 552541 TTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 |||||||||| || |||||||||||| | || ||| | |||| |||| Sbjct 5928 TTGAAGTTACCTTTGATATCGATGCCGACGGTATTATCCATGTATCTGC 5880 >seq1931 Length=77865 Score = 102 bits (112), Expect = 7e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 720788 CTCCATCCCTTCCTGCACGACCAATTTCTTGATAATATCCTTCAATATTTTTAGGTGCAC 720847 |||| || ||||| || | |||| |||||||||||||||| || | | |||||||| Sbjct 29162 CTCCGTCTCTTCCGGCCCTACCAGTTTCTTGATAATATCCCTCCAAACTTTTAGGTATGT 29221 Query 720848 CATAATGTATAACTGCTCTCACATCACTTTTATTTATTCCCATTCCAAAAGCAATCGTCG 720907 |||| || ||||| |||||| ||| ||||| |||||||| ||||| ||||| |||| Sbjct 29222 CATAGTGAATAACAAATCTCACGTCAGGTTTATCAATTCCCATCCCAAATGCAATAGTCG 29281 Query 720908 CAACCATAACTTTAAC 720923 | || || || | ||| Sbjct 29282 CCACGATCACATCAAC 29297 >seq3027 Length=114882 Score = 91.5 bits (100), Expect = 1e-12 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || || || ||||| || || || || ||||| || || || || ||||||||| ||| Sbjct 59619 GGACAGGAGGTTACTGAGGCTGTCATCACTGTTCCTGCTTACTTCTCTGACTCACAGCGT 59560 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 || |||||||| || ||||| | || || || ||| | ||| ||||| | || || Sbjct 59559 CAGGCTACTAAGGAGGCTGGCCAGATCGCAGGCCTTGAGGTTAAGCGTATCGTGAACGAG 59500 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||||||||| || || || ||||| |||| || Sbjct 59499 CCTACTGCTGCGGCTCTCGCCTATGGTATTGACAA 59465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029026341883510