Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_016770.1 Length=47159 Score E Sequences producing significant alignments: (Bits) Value seq139 495 1e-135 seq4004 365 1e-96 seq4862 125 2e-24 seq4827 104 7e-18 seq1923 102 2e-17 seq582 80.6 8e-11 >seq139 Length=2517 Score = 495 bits (548), Expect = 1e-135 Identities = 504/657 (77%), Gaps = 0/657 (0%) Strand=Plus/Plus Query 44658 AATCAATGATAGATACCATGATTTTTCCATCCCTCTTGTTGGCAATTGGCTGGGAAATAA 44717 |||||||||||||| |||| | || |||||| || || ||||| ||| || || | Sbjct 18 AATCAATGATAGATGCCATATTCTTCCCATCCTTCCTGCTGGCAGTTGATGGGTGCATGA 77 Query 44718 ATACCTGTGTAAACAAGATAACGATATAATGTTCCCTTTGACACTTTCAAATTCTTAGCT 44777 | ||||| |||||||| || || || || || |||||| ||||| | ||||| ||| Sbjct 78 AGCCCTGTATAAACAAGGTAGCGGTAAAAGGTGGTCTTTGATACTTTTAGTTTCTTGGCT 137 Query 44778 ATAAAAGTTTTTTCTGTTCCTTTATCCAATTCTTTTACAATATAATCATGTTTGTTGGCA 44837 || | ||||| ||||| |||||||| | |||||| ||||| | |||||||||||| || Sbjct 138 ATGACCGTTTTCTCTGTGCCTTTATCAAGTTCTTTGACAATCCAGTCATGTTTGTTGACA 197 Query 44838 CATTTGGGATTAAGTCTACAGCGAAAGCCACGACGATGACCGAGCATTGCCCCTTCTGCt 44897 ||||| || ||||| ||||| ||||| || | |||| || || |||| |||||||| Sbjct 198 CATTTAGGGTTAAGCCTACAACGAAATCCTCTCGGATGCCCAAGTTTTGCACCTTCTGCC 257 Query 44898 ttttttCTCGCTAATGCCTCTTTTGTACGTTGACTGATAAGATTACGTTCAATCTCAGCT 44957 || |||||||| || |||||||||||||| ||||||||||| || || || |||||||| Sbjct 258 TTCTTTCTCGCCAAAGCCTCTTTTGTACGCTGACTGATAAGGTTGCGCTCTATCTCAGCA 317 Query 44958 GACAATCCGAAAGCAAAGGCAAGAACTTTACTTTGTATATCTTCCCCAAGTCGATAGTTA 45017 ||||| ||||||||||||||||| ||||| || || || || || || || || ||||| Sbjct 318 GACAACCCGAAAGCAAAGGCAAGGACTTTGCTCTGGATGTCATCGCCCAGACGGTAGTTG 377 Query 45018 TCTTTAATTGTCCACACCTTGCATCCCTTTGTCATACAGATATTCAAGATTTCCATAATC 45077 ||||| || ||||| || ||| |||||||||| |||||||| || || ||||||||| Sbjct 378 TCTTTGATAGTCCAGACGCGGCACTCCTTTGTCATGCAGATATTTAAAATCTCCATAATC 437 Query 45078 ATAAAGAGATTACGCCCAAGACGTGAAAGTTCACTACAGATGATAATATCATCTTTGCGT 45137 ||||||||||| | || ||||| || | ||||||||||| || || ||||| ||| | Sbjct 438 ATAAAGAGATTCCTGCCGAGACGGGACAACTCACTACAGATAATGATGTCATCCTTGTGG 497 Query 45138 ACTTTACGTAGTAAACGTCCAAGCTGTCGTTTTGTGTAATTTTTCGTTCCACTAATAGTT 45197 |||||||| | || | ||||| || | || | ||| || || || ||||| |||||| Sbjct 498 ACTTTACGCAATAGCCTCCCAAGTTGCCTCTTGGAGTAGTTCTTTGTGCCACTGATAGTT 557 Query 45198 TCTTCAATCCAATCATCAATTGTTAACTCATTAATTTTACAGAAATTACTTATCTCGAAA 45257 || || ||||| || | ||| ||| | | | | |||||| || | ||||| || Sbjct 558 TCCTCTATCCAGTCGTTAATGACTAAGTTCTGCTTCTCACAGAACTTGTTAATCTCAAAG 617 Query 45258 CGTTGGTTTTCTACAGTTTGTTTATCACTACTTACTCTAATGTATCCGTAAATCATA 45314 |||||||| || || || || || ||||| |||||||| |||||||||||||||||| Sbjct 618 CGTTGGTTCTCAACCGTCTGCTTGTCACTGCTTACTCTGATGTATCCGTAAATCATA 674 >seq4004 Length=64597 Score = 365 bits (404), Expect = 1e-96 Identities = 336/425 (79%), Gaps = 0/425 (0%) Strand=Plus/Plus Query 44889 CCTTCTGCtttttttCTCGCTAATGCCTCTTTTGTACGTTGACTGATAAGATTACGTTCA 44948 ||||||||||| ||||| || || || ||||| || |||||||| ||||| ||||||||| Sbjct 438 CCTTCTGCTTTCTTTCTTGCCAAAGCTTCTTTGGTGCGTTGACTAATAAGGTTACGTTCA 497 Query 44949 ATCTCAGCTGACAATCCGAAAGCAAAGGCAAGAACTTTACTTTGTATATCTTCCCCAAGT 45008 || || || || | || || ||||| || | ||||| ||||| ||||| || || | Sbjct 498 ATTTCTGCAGAAAGACCAAATGCAAATGCCAACACTTTGCTTTGGATATCATCTCCCAAA 557 Query 45009 CGATAGTTATCTTTAATTGTCCACACCTTGCATCCCTTTGTCATACAGATATTCAAGATT 45068 ||||| || |||||||||||||| || ||||| |||||||||| || || |||| |||| Sbjct 558 CGATAATTGTCTTTAATTGTCCATACTCTGCATTCCTTTGTCATGCATATGTTCAGGATT 617 Query 45069 TCCATAATCATAAAGAGATTACGCCCAAGACGTGAAAGTTCACTACAGATGATAATATCA 45128 |||||||||||||| ||||| | || || || ||||||||||||||||| |||||||| Sbjct 618 TCCATAATCATAAAAAGATTCCTACCTAGTCGAGAAAGTTCACTACAGATAATAATATCG 677 Query 45129 TCTTTGCGTACTTTACGTAGTAAACGTCCAAGCTGTCGTTTTGTGTAATTTTTCGTTCCA 45188 ||||| | ||||| ||| ||| || | |||||||||||||| ||||| || ||| Sbjct 678 TCTTTACTCACTTTCTTTAGCAAATTGCCTAATTGTCGTTTTGTGTAGTTTTTTGTACCA 737 Query 45189 CTAATAGTTTCTTCAATCCAATCATCAATTGTTAACTCATTAATTTTACAGAAATTACTT 45248 || || |||||||| ||||| || | ||| || | || | | ||||| || | Sbjct 738 CTGATGGTTTCTTCTATCCAGTCGTTAATCACTATGTTCTTCTTCTCGCAGAACTTGTTA 797 Query 45249 ATCTCGAAACGTTGGTTTTCTACAGTTTGTTTATCACTACTTACTCTAATGTATCCGTAA 45308 ||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||| Sbjct 798 ATCTCGAAACGTTGGTTCTCGACAGTTTGTTTGTCGCTACTTACTCTAATGTATCCGTAA 857 Query 45309 ATCAT 45313 ||||| Sbjct 858 ATCAT 862 >seq4862 Length=22468 Score = 125 bits (138), Expect = 2e-24 Identities = 307/459 (67%), Gaps = 16/459 (3%) Strand=Plus/Minus Query 44863 AGCCACGACGATGACCGAGCATTGCCCCTTCTGCtttttttCT---CGCTAATGCCTCTT 44919 ||||| || | ||||||| || |||| || ||||| || ||||| || |||| Sbjct 20456 AGCCAAGAGGCCGACCGAGTTTTACCCCCTCA---TTTTTCCTGAGCGCTAGGGCTTCTT 20400 Query 44920 TTGTACGTTGACTGATAAGATTACGTTCAATCTCAGCTGACAATCCGAAAGCAAAGGCAA 44979 |||| || || || || || || || || || || || || ||||| |||||||| | Sbjct 20399 TTGTGCGCTGGCTTATCAGGTTCCGCTCGATTTCTGCGCTCAGGCCGAATGCAAAGGCCA 20340 Query 44980 GAACTTTACTTTGTATATCTTCCCCAAGTCGATAGTTATCTTTAATTGTCCACACCTTGC 45039 |||| || || || || || | ||||| || ||||| || || || ||||| ||| || Sbjct 20339 GAACCTTGCTCTGAATGTCGTTACCAAGCCGGTAGTTGTCCTTGATAGTCCAGACCC-GC 20281 Query 45040 ATCCCTTTGTCATACAGA-TATTCAAGATTTCCATAATCATAAAGAGATTACGCCCAAGA 45098 ||||| || |||| | |||| | | |||||||||||| ||| | ||||| || Sbjct 20280 GCACCTTTTTCCATCAGAATGTTCAGCACTGACATAATCATAAAAAGACTTCGCCCCAGC 20221 Query 45099 CGTGAAAGTTCACTACAGATGATAATATCATC----TTTGCGTACTTTACGTAGTAAACG 45154 ||||||||||| ||||| |||| ||||| ||| || || || || | Sbjct 20220 CGTGAAAGTTCCGAGCAGATTATAAGGTCATCCTTTTTTACGCCCT---CG-AGCAGTTT 20165 Query 45155 TCCAAGCTGTCGTTTTGTGTAATTTTTCGTTCCACTAATAGTTTCTTCAATCCAATCATC 45214 ||||| | || ||| | | || || || ||||| |||||||||||| ||| Sbjct 20164 CCCAAGTTCCCGCTTTTTCGGCTCAACTGTCCCGCTGATAGTCTCTTCAATCCAAGAATC 20105 Query 45215 AATTGTTAACTCATTAATTTTACAGAAATTACTTATCTCGAAACGTTGGTTTTCTACAGT 45274 | || | | | |||| ||||| | | ||||| || || ||||| || ||||| Sbjct 20104 GACGGTAATTCCCTGTTTTTTGCAGAACTCAAGAATCTCAAACCGCTGGTTCTCCACAGT 20045 Query 45275 TTGTTTATCACTACTTACTCTAATGTATCCGTAAATCAT 45313 || | | | || |||| ||| |||||||| |||| Sbjct 20044 CTGCCTGTTTGTGCTCACTCGAATATATCCGTAGGTCAT 20006 >seq4827 Length=48210 Score = 104 bits (114), Expect = 7e-18 Identities = 294/445 (66%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 44875 GACCGAGCATTGCCCCTTCTGCtttttttCTC---GCTAATGCCTCTTTTGTACGTTGAC 44931 |||||||| || | ||||| ||||| | | || | || |||||||| | || | Sbjct 4258 GACCGAGCTTTACTCCTTCC---TTTTTGCGCAGAGCAAGGGCTTCTTTTGTCCTCTGGC 4314 Query 44932 TGATAAGATTACGTTCAATCTCAGCTGACAATCCGAAAGCAAAGGCAAGAACTTTACTTT 44991 | ||||| | | ||| || || || ||| ||||| ||||| || ||||| || || | Sbjct 4315 TTATAAGCTGCCTTTCGATTTCCGCGCTCAAGCCGAATGCAAAAGCCAGAACCTTGCTCT 4374 Query 44992 GTATATCTTCCCCAAGTCGATAGTTATCTTTAATTGTCCACACCTTGCATCCCTTTGTCA 45051 | || || || ||||| | || || || || |||||||| || || || ||| || Sbjct 4375 GAATGTCGTCTCCAAGCCTGTAATTGTCCTTTATTGTCCAGACTTTTACGCCTTTTTCCA 4434 Query 45052 TACAGAT-ATTCAAGATTTCCATAATCATAAAGAGATTACGCCCAAGACGTGAAAGTTCA 45110 | |||| ||| |||| | |||||||||||| || | || ||||| || ||||| || Sbjct 4435 T-CAGAAGATTTAAGACTGACATAATCATAAAAAGGCTCCGGCCAAGGCGGGAAAGCTCG 4493 Query 45111 CTACAGATGATAATATCATCTTTGCGTACTTTACGTAGTAAACGTCCAAGCTGTCGTTTT 45170 ||||| |||| || |||| || | | | |||||| | || ||| Sbjct 4494 GAGCAGATTATAAGGTCGCCTTTTTCAACCCGAAAAATCAGTTTTCCAAGTTCCCGCTTT 4553 Query 45171 GTGTAATTTTTCGTTCCACTAATAGTTTCTTCAATCCAATCATCAATTGTTAACTCATT- 45229 | | || || || | ||| || |||||||| || |||| | || || || Sbjct 4554 TTAGGCTCAACAGTGCCGCTGACAGTCTCCTCAATCCAGTCGTCAA-TCAAAATTCCTTC 4612 Query 45230 AATTTTACAGAAATTACTTATCTCGAAACGTTGGTTTTCTACAGTTTGTTTATCACTACT 45289 |||| ||||| | ||||||| |||| ||||| || ||||| || | |||| || Sbjct 4613 CTTTTTGCAGAATTCTGTTATCTCATAACGCTGGTTCTCGACAGTCTGCCTGTCACAGCT 4672 Query 45290 TACTCTAATGTATCCGTAAATCATA 45314 || | ||| |||||||| ||||| Sbjct 4673 CACCCGAATATATCCGTATGTCATA 4697 >seq1923 Length=163503 Score = 102 bits (112), Expect = 2e-17 Identities = 273/414 (66%), Gaps = 5/414 (1%) Strand=Plus/Plus Query 3452 ACCTGCGCTACCATAGACAGCAAGATAGAATAAGACGCAATGTTGAAAGGAACGCCTAAA 3511 ||||| || ||||| ||||| | || |||||| ||||| || ||||||||||| | | Sbjct 156451 ACCTGAGCAACCATCATAAGCAATAAAGCATAAGAAGCAATATTAAAAGGAACGCCAAGA 156510 Query 3512 AATAGGTCTGCACTTCTTTGATACAGTTTCAAATCCAAATAACCGGACTCAGACACATAG 3571 || ||||||||||| ||||| || | | ||| | ||| | | ||||||| Sbjct 156511 AACGTATCTGCACTTCTCTGATAGAGCTGAAGGCTCAACTTGCCG---TTTGCCACATAG 156567 Query 3572 AACTGAAAAAAGCAGTGGCACGGAGGAAGTGCCATCATGTGTATTTCTCCAACATTCCAA 3631 || ||||||| | |||||| || || || ||| | | || || ||||||||||| Sbjct 156568 AATTGAAAAAGGATGTGGCATGGTGGGAGATTCATATTATCAATATCAGCAACATTCCAA 156627 Query 3632 GCACTAACAATTAACCTTCTTGACTTCGGGTTGAACTTAATCATATCTATAACTGAATCA 3691 ||| ||||| | ||||| || | || || || ||| || || ||| || Sbjct 156628 GCAGACACAATCATTCTTCTAGAATCGGGATTATTTTTTATCTGGTCGATTACTTGTGCA 156687 Query 3692 ATTTGATCTA-CTCTTAACTTGCTATTTATACGCCAGTCACGCCATTGTTTACCGTATAT 3750 || ||||||| | | || ||| | |||| | |||||| | || || || Sbjct 156688 ATCTGATCTATATGTCCAC-CATTATAATCAGGCCAAGACCTCCATTGATATCCATAGAT 156746 Query 3751 ACGTCCAAGATCACCGGAAGGCTTTGCCCATTCGTCCCAAATATGAACACCACTTTCATT 3810 | |||| || | || ||| | |||||||| | ||| || || ||| ||| | Sbjct 156747 ATGTCCGAGGTTGCCATCAGGATCAGCCCATTCATTCCAGATTCTGACTCCATGTTCTTG 156806 Query 3811 TAGGTATTTTATATTGGTGTCTCCTTTTAACATCCAAAGAAGCTCATATATAAT 3864 || |||||| ||| || || || || || | |||||| || || |||||||| Sbjct 156807 CAGATATTTTGCATTAGTATCACCATTCAAGAACCAAAGCAGTTCGTATATAAT 156860 >seq582 Length=6698 Score = 80.6 bits (88), Expect = 8e-11 Identities = 162/236 (69%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 3409 GTCCCCGATAGTGTGAATGAATCTACGAGGCTTTAAGCCGCAAACCTGCGCTACCAT-AG 3467 ||| ||| | ||||||||||| || |||||| | ||||| |||||||| | ||| | Sbjct 6418 GTCGCCGGTGGTGTGAATGAAGTCACCAGGCTTCAGACCGCAGACCTGCGCCATCATCAT 6477 Query 3468 ACAGCAAGATAGAATAAGACGCAATGTTGAAAGGAACGCCTAAAAATAGGTCTGCACTTC 3527 ||| | | | ||| || || ||||||||||| ||||| || || ||| ||||| | Sbjct 6478 GCAG-AGCAGCGCATAGGAGGCGATGTTGAAAGGCACGCCCAAGAAGGTGTCGGCACTGC 6536 Query 3528 TTTGATACAGTTTCAAATCCAAATAACCGGAC-TCAGACACATAGAACTGAAAAAAGCAG 3586 ||||| |||| || | | ||| | || | |||||||||||| || ||| Sbjct 6537 GCTGATAGAGTTGCA----GCGAGAGTCGGCCGTCGGCCACATAGAACTGGAAGAAGGCA 6592 Query 3587 TGGCACGGAGGAAGTGCCATCATGTGTATTTCTCCAACATTCCAAGCACTAACAAT 3642 ||||| || || || ||| | | || | |||||||||||||| ||||| Sbjct 6593 TGGCAGGGTGGGAGATTCATGTTCCCCAAGTCAGCCACATTCCAAGCACTGACAAT 6648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150778069740798