Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= NC_016770.1
Length=47159
Score E
Sequences producing significant alignments: (Bits) Value
seq139 495 1e-135
seq4004 365 1e-96
seq4862 125 2e-24
seq4827 104 7e-18
seq1923 102 2e-17
seq582 80.6 8e-11
>seq139
Length=2517
Score = 495 bits (548), Expect = 1e-135
Identities = 504/657 (77%), Gaps = 0/657 (0%)
Strand=Plus/Plus
Query 44658 AATCAATGATAGATACCATGATTTTTCCATCCCTCTTGTTGGCAATTGGCTGGGAAATAA 44717
|||||||||||||| |||| | || |||||| || || ||||| ||| || || |
Sbjct 18 AATCAATGATAGATGCCATATTCTTCCCATCCTTCCTGCTGGCAGTTGATGGGTGCATGA 77
Query 44718 ATACCTGTGTAAACAAGATAACGATATAATGTTCCCTTTGACACTTTCAAATTCTTAGCT 44777
| ||||| |||||||| || || || || || |||||| ||||| | ||||| |||
Sbjct 78 AGCCCTGTATAAACAAGGTAGCGGTAAAAGGTGGTCTTTGATACTTTTAGTTTCTTGGCT 137
Query 44778 ATAAAAGTTTTTTCTGTTCCTTTATCCAATTCTTTTACAATATAATCATGTTTGTTGGCA 44837
|| | ||||| ||||| |||||||| | |||||| ||||| | |||||||||||| ||
Sbjct 138 ATGACCGTTTTCTCTGTGCCTTTATCAAGTTCTTTGACAATCCAGTCATGTTTGTTGACA 197
Query 44838 CATTTGGGATTAAGTCTACAGCGAAAGCCACGACGATGACCGAGCATTGCCCCTTCTGCt 44897
||||| || ||||| ||||| ||||| || | |||| || || |||| ||||||||
Sbjct 198 CATTTAGGGTTAAGCCTACAACGAAATCCTCTCGGATGCCCAAGTTTTGCACCTTCTGCC 257
Query 44898 ttttttCTCGCTAATGCCTCTTTTGTACGTTGACTGATAAGATTACGTTCAATCTCAGCT 44957
|| |||||||| || |||||||||||||| ||||||||||| || || || ||||||||
Sbjct 258 TTCTTTCTCGCCAAAGCCTCTTTTGTACGCTGACTGATAAGGTTGCGCTCTATCTCAGCA 317
Query 44958 GACAATCCGAAAGCAAAGGCAAGAACTTTACTTTGTATATCTTCCCCAAGTCGATAGTTA 45017
||||| ||||||||||||||||| ||||| || || || || || || || || |||||
Sbjct 318 GACAACCCGAAAGCAAAGGCAAGGACTTTGCTCTGGATGTCATCGCCCAGACGGTAGTTG 377
Query 45018 TCTTTAATTGTCCACACCTTGCATCCCTTTGTCATACAGATATTCAAGATTTCCATAATC 45077
||||| || ||||| || ||| |||||||||| |||||||| || || |||||||||
Sbjct 378 TCTTTGATAGTCCAGACGCGGCACTCCTTTGTCATGCAGATATTTAAAATCTCCATAATC 437
Query 45078 ATAAAGAGATTACGCCCAAGACGTGAAAGTTCACTACAGATGATAATATCATCTTTGCGT 45137
||||||||||| | || ||||| || | ||||||||||| || || ||||| ||| |
Sbjct 438 ATAAAGAGATTCCTGCCGAGACGGGACAACTCACTACAGATAATGATGTCATCCTTGTGG 497
Query 45138 ACTTTACGTAGTAAACGTCCAAGCTGTCGTTTTGTGTAATTTTTCGTTCCACTAATAGTT 45197
|||||||| | || | ||||| || | || | ||| || || || ||||| ||||||
Sbjct 498 ACTTTACGCAATAGCCTCCCAAGTTGCCTCTTGGAGTAGTTCTTTGTGCCACTGATAGTT 557
Query 45198 TCTTCAATCCAATCATCAATTGTTAACTCATTAATTTTACAGAAATTACTTATCTCGAAA 45257
|| || ||||| || | ||| ||| | | | | |||||| || | ||||| ||
Sbjct 558 TCCTCTATCCAGTCGTTAATGACTAAGTTCTGCTTCTCACAGAACTTGTTAATCTCAAAG 617
Query 45258 CGTTGGTTTTCTACAGTTTGTTTATCACTACTTACTCTAATGTATCCGTAAATCATA 45314
|||||||| || || || || || ||||| |||||||| ||||||||||||||||||
Sbjct 618 CGTTGGTTCTCAACCGTCTGCTTGTCACTGCTTACTCTGATGTATCCGTAAATCATA 674
>seq4004
Length=64597
Score = 365 bits (404), Expect = 1e-96
Identities = 336/425 (79%), Gaps = 0/425 (0%)
Strand=Plus/Plus
Query 44889 CCTTCTGCtttttttCTCGCTAATGCCTCTTTTGTACGTTGACTGATAAGATTACGTTCA 44948
||||||||||| ||||| || || || ||||| || |||||||| ||||| |||||||||
Sbjct 438 CCTTCTGCTTTCTTTCTTGCCAAAGCTTCTTTGGTGCGTTGACTAATAAGGTTACGTTCA 497
Query 44949 ATCTCAGCTGACAATCCGAAAGCAAAGGCAAGAACTTTACTTTGTATATCTTCCCCAAGT 45008
|| || || || | || || ||||| || | ||||| ||||| ||||| || || |
Sbjct 498 ATTTCTGCAGAAAGACCAAATGCAAATGCCAACACTTTGCTTTGGATATCATCTCCCAAA 557
Query 45009 CGATAGTTATCTTTAATTGTCCACACCTTGCATCCCTTTGTCATACAGATATTCAAGATT 45068
||||| || |||||||||||||| || ||||| |||||||||| || || |||| ||||
Sbjct 558 CGATAATTGTCTTTAATTGTCCATACTCTGCATTCCTTTGTCATGCATATGTTCAGGATT 617
Query 45069 TCCATAATCATAAAGAGATTACGCCCAAGACGTGAAAGTTCACTACAGATGATAATATCA 45128
|||||||||||||| ||||| | || || || ||||||||||||||||| ||||||||
Sbjct 618 TCCATAATCATAAAAAGATTCCTACCTAGTCGAGAAAGTTCACTACAGATAATAATATCG 677
Query 45129 TCTTTGCGTACTTTACGTAGTAAACGTCCAAGCTGTCGTTTTGTGTAATTTTTCGTTCCA 45188
||||| | ||||| ||| ||| || | |||||||||||||| ||||| || |||
Sbjct 678 TCTTTACTCACTTTCTTTAGCAAATTGCCTAATTGTCGTTTTGTGTAGTTTTTTGTACCA 737
Query 45189 CTAATAGTTTCTTCAATCCAATCATCAATTGTTAACTCATTAATTTTACAGAAATTACTT 45248
|| || |||||||| ||||| || | ||| || | || | | ||||| || |
Sbjct 738 CTGATGGTTTCTTCTATCCAGTCGTTAATCACTATGTTCTTCTTCTCGCAGAACTTGTTA 797
Query 45249 ATCTCGAAACGTTGGTTTTCTACAGTTTGTTTATCACTACTTACTCTAATGTATCCGTAA 45308
||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||
Sbjct 798 ATCTCGAAACGTTGGTTCTCGACAGTTTGTTTGTCGCTACTTACTCTAATGTATCCGTAA 857
Query 45309 ATCAT 45313
|||||
Sbjct 858 ATCAT 862
>seq4862
Length=22468
Score = 125 bits (138), Expect = 2e-24
Identities = 307/459 (67%), Gaps = 16/459 (3%)
Strand=Plus/Minus
Query 44863 AGCCACGACGATGACCGAGCATTGCCCCTTCTGCtttttttCT---CGCTAATGCCTCTT 44919
||||| || | ||||||| || |||| || ||||| || ||||| || ||||
Sbjct 20456 AGCCAAGAGGCCGACCGAGTTTTACCCCCTCA---TTTTTCCTGAGCGCTAGGGCTTCTT 20400
Query 44920 TTGTACGTTGACTGATAAGATTACGTTCAATCTCAGCTGACAATCCGAAAGCAAAGGCAA 44979
|||| || || || || || || || || || || || || ||||| |||||||| |
Sbjct 20399 TTGTGCGCTGGCTTATCAGGTTCCGCTCGATTTCTGCGCTCAGGCCGAATGCAAAGGCCA 20340
Query 44980 GAACTTTACTTTGTATATCTTCCCCAAGTCGATAGTTATCTTTAATTGTCCACACCTTGC 45039
|||| || || || || || | ||||| || ||||| || || || ||||| ||| ||
Sbjct 20339 GAACCTTGCTCTGAATGTCGTTACCAAGCCGGTAGTTGTCCTTGATAGTCCAGACCC-GC 20281
Query 45040 ATCCCTTTGTCATACAGA-TATTCAAGATTTCCATAATCATAAAGAGATTACGCCCAAGA 45098
||||| || |||| | |||| | | |||||||||||| ||| | ||||| ||
Sbjct 20280 GCACCTTTTTCCATCAGAATGTTCAGCACTGACATAATCATAAAAAGACTTCGCCCCAGC 20221
Query 45099 CGTGAAAGTTCACTACAGATGATAATATCATC----TTTGCGTACTTTACGTAGTAAACG 45154
||||||||||| ||||| |||| ||||| ||| || || || || |
Sbjct 20220 CGTGAAAGTTCCGAGCAGATTATAAGGTCATCCTTTTTTACGCCCT---CG-AGCAGTTT 20165
Query 45155 TCCAAGCTGTCGTTTTGTGTAATTTTTCGTTCCACTAATAGTTTCTTCAATCCAATCATC 45214
||||| | || ||| | | || || || ||||| |||||||||||| |||
Sbjct 20164 CCCAAGTTCCCGCTTTTTCGGCTCAACTGTCCCGCTGATAGTCTCTTCAATCCAAGAATC 20105
Query 45215 AATTGTTAACTCATTAATTTTACAGAAATTACTTATCTCGAAACGTTGGTTTTCTACAGT 45274
| || | | | |||| ||||| | | ||||| || || ||||| || |||||
Sbjct 20104 GACGGTAATTCCCTGTTTTTTGCAGAACTCAAGAATCTCAAACCGCTGGTTCTCCACAGT 20045
Query 45275 TTGTTTATCACTACTTACTCTAATGTATCCGTAAATCAT 45313
|| | | | || |||| ||| |||||||| ||||
Sbjct 20044 CTGCCTGTTTGTGCTCACTCGAATATATCCGTAGGTCAT 20006
>seq4827
Length=48210
Score = 104 bits (114), Expect = 7e-18
Identities = 294/445 (66%), Gaps = 10/445 (2%)
Strand=Plus/Plus
Query 44875 GACCGAGCATTGCCCCTTCTGCtttttttCTC---GCTAATGCCTCTTTTGTACGTTGAC 44931
|||||||| || | ||||| ||||| | | || | || |||||||| | || |
Sbjct 4258 GACCGAGCTTTACTCCTTCC---TTTTTGCGCAGAGCAAGGGCTTCTTTTGTCCTCTGGC 4314
Query 44932 TGATAAGATTACGTTCAATCTCAGCTGACAATCCGAAAGCAAAGGCAAGAACTTTACTTT 44991
| ||||| | | ||| || || || ||| ||||| ||||| || ||||| || || |
Sbjct 4315 TTATAAGCTGCCTTTCGATTTCCGCGCTCAAGCCGAATGCAAAAGCCAGAACCTTGCTCT 4374
Query 44992 GTATATCTTCCCCAAGTCGATAGTTATCTTTAATTGTCCACACCTTGCATCCCTTTGTCA 45051
| || || || ||||| | || || || || |||||||| || || || ||| ||
Sbjct 4375 GAATGTCGTCTCCAAGCCTGTAATTGTCCTTTATTGTCCAGACTTTTACGCCTTTTTCCA 4434
Query 45052 TACAGAT-ATTCAAGATTTCCATAATCATAAAGAGATTACGCCCAAGACGTGAAAGTTCA 45110
| |||| ||| |||| | |||||||||||| || | || ||||| || ||||| ||
Sbjct 4435 T-CAGAAGATTTAAGACTGACATAATCATAAAAAGGCTCCGGCCAAGGCGGGAAAGCTCG 4493
Query 45111 CTACAGATGATAATATCATCTTTGCGTACTTTACGTAGTAAACGTCCAAGCTGTCGTTTT 45170
||||| |||| || |||| || | | | |||||| | || |||
Sbjct 4494 GAGCAGATTATAAGGTCGCCTTTTTCAACCCGAAAAATCAGTTTTCCAAGTTCCCGCTTT 4553
Query 45171 GTGTAATTTTTCGTTCCACTAATAGTTTCTTCAATCCAATCATCAATTGTTAACTCATT- 45229
| | || || || | ||| || |||||||| || |||| | || || ||
Sbjct 4554 TTAGGCTCAACAGTGCCGCTGACAGTCTCCTCAATCCAGTCGTCAA-TCAAAATTCCTTC 4612
Query 45230 AATTTTACAGAAATTACTTATCTCGAAACGTTGGTTTTCTACAGTTTGTTTATCACTACT 45289
|||| ||||| | ||||||| |||| ||||| || ||||| || | |||| ||
Sbjct 4613 CTTTTTGCAGAATTCTGTTATCTCATAACGCTGGTTCTCGACAGTCTGCCTGTCACAGCT 4672
Query 45290 TACTCTAATGTATCCGTAAATCATA 45314
|| | ||| |||||||| |||||
Sbjct 4673 CACCCGAATATATCCGTATGTCATA 4697
>seq1923
Length=163503
Score = 102 bits (112), Expect = 2e-17
Identities = 273/414 (66%), Gaps = 5/414 (1%)
Strand=Plus/Plus
Query 3452 ACCTGCGCTACCATAGACAGCAAGATAGAATAAGACGCAATGTTGAAAGGAACGCCTAAA 3511
||||| || ||||| ||||| | || |||||| ||||| || ||||||||||| | |
Sbjct 156451 ACCTGAGCAACCATCATAAGCAATAAAGCATAAGAAGCAATATTAAAAGGAACGCCAAGA 156510
Query 3512 AATAGGTCTGCACTTCTTTGATACAGTTTCAAATCCAAATAACCGGACTCAGACACATAG 3571
|| ||||||||||| ||||| || | | ||| | ||| | | |||||||
Sbjct 156511 AACGTATCTGCACTTCTCTGATAGAGCTGAAGGCTCAACTTGCCG---TTTGCCACATAG 156567
Query 3572 AACTGAAAAAAGCAGTGGCACGGAGGAAGTGCCATCATGTGTATTTCTCCAACATTCCAA 3631
|| ||||||| | |||||| || || || ||| | | || || |||||||||||
Sbjct 156568 AATTGAAAAAGGATGTGGCATGGTGGGAGATTCATATTATCAATATCAGCAACATTCCAA 156627
Query 3632 GCACTAACAATTAACCTTCTTGACTTCGGGTTGAACTTAATCATATCTATAACTGAATCA 3691
||| ||||| | ||||| || | || || || ||| || || ||| ||
Sbjct 156628 GCAGACACAATCATTCTTCTAGAATCGGGATTATTTTTTATCTGGTCGATTACTTGTGCA 156687
Query 3692 ATTTGATCTA-CTCTTAACTTGCTATTTATACGCCAGTCACGCCATTGTTTACCGTATAT 3750
|| ||||||| | | || ||| | |||| | |||||| | || || ||
Sbjct 156688 ATCTGATCTATATGTCCAC-CATTATAATCAGGCCAAGACCTCCATTGATATCCATAGAT 156746
Query 3751 ACGTCCAAGATCACCGGAAGGCTTTGCCCATTCGTCCCAAATATGAACACCACTTTCATT 3810
| |||| || | || ||| | |||||||| | ||| || || ||| ||| |
Sbjct 156747 ATGTCCGAGGTTGCCATCAGGATCAGCCCATTCATTCCAGATTCTGACTCCATGTTCTTG 156806
Query 3811 TAGGTATTTTATATTGGTGTCTCCTTTTAACATCCAAAGAAGCTCATATATAAT 3864
|| |||||| ||| || || || || || | |||||| || || ||||||||
Sbjct 156807 CAGATATTTTGCATTAGTATCACCATTCAAGAACCAAAGCAGTTCGTATATAAT 156860
>seq582
Length=6698
Score = 80.6 bits (88), Expect = 8e-11
Identities = 162/236 (69%), Gaps = 7/236 (3%)
Strand=Plus/Plus
Query 3409 GTCCCCGATAGTGTGAATGAATCTACGAGGCTTTAAGCCGCAAACCTGCGCTACCAT-AG 3467
||| ||| | ||||||||||| || |||||| | ||||| |||||||| | ||| |
Sbjct 6418 GTCGCCGGTGGTGTGAATGAAGTCACCAGGCTTCAGACCGCAGACCTGCGCCATCATCAT 6477
Query 3468 ACAGCAAGATAGAATAAGACGCAATGTTGAAAGGAACGCCTAAAAATAGGTCTGCACTTC 3527
||| | | | ||| || || ||||||||||| ||||| || || ||| ||||| |
Sbjct 6478 GCAG-AGCAGCGCATAGGAGGCGATGTTGAAAGGCACGCCCAAGAAGGTGTCGGCACTGC 6536
Query 3528 TTTGATACAGTTTCAAATCCAAATAACCGGAC-TCAGACACATAGAACTGAAAAAAGCAG 3586
||||| |||| || | | ||| | || | |||||||||||| || |||
Sbjct 6537 GCTGATAGAGTTGCA----GCGAGAGTCGGCCGTCGGCCACATAGAACTGGAAGAAGGCA 6592
Query 3587 TGGCACGGAGGAAGTGCCATCATGTGTATTTCTCCAACATTCCAAGCACTAACAAT 3642
||||| || || || ||| | | || | |||||||||||||| |||||
Sbjct 6593 TGGCAGGGTGGGAGATTCATGTTCCCCAAGTCAGCCACATTCCAAGCACTGACAAT 6648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150778069740798
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |