Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq4688 122 7e-23 seq127 114 1e-20 seq4293 113 4e-20 seq2451 107 2e-18 seq3719 82.4 6e-11 >seq4688 Length=13253 Score = 122 bits (134), Expect = 7e-23 Identities = 233/338 (69%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 29766 GGGAAAGGGTCTGGGCTCCCT-CTCGAGCTGAGTCTTC-AGCGGTTCCACGTGATCCAGG 29823 ||| | ||| |||||||| | ||| ||||| ||| | | | | || | ||| | ||| Sbjct 4028 GGGCAGGGGCCTGGGCTCGCGGCTC-AGCTGC-TCTGCGACCTGGTCGAAGTGGTTGAGG 3971 Query 29824 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29883 |||| ||| | ||| || | || |||||| ||||| || || | || || ||||| || Sbjct 3970 TAGATGTGGGTGTCGCCGAAGGAGTGGACGAACTCGCCGGGCTGCAGGCCCGTGACCTGT 3911 Query 29884 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 29943 || ||||| |||||||| | ||| ||||||||| ||||| || ||||| | | Sbjct 3910 GCGATCATCATGGTGAGGAGGGCATAGGAGGCGATGTTGAAGGGCACTCCGAGGAAGACG 3851 Query 29944 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 30003 || | | |||||||||||| || || |||||| ||||| ||||| || Sbjct 3850 TCGGCGCTGCGCTGGTAGAGCTGGCAGCTCAGGCGGCCGTCGGCTACGTAGAACTGGAAC 3791 Query 30004 ATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30063 | | |||||| || || || ||||| | | | ||| |||||||||||||| ||| Sbjct 3790 AGGCAGTGGCAGGGCGGGAGGGCCATCTTGTCGATGTCGGCCGGGTTCCAGGCGCAGACG 3731 Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 30101 | |||||| | | || ||||||| | |||||||| Sbjct 3730 AGGATGCGGCGGGAGTCGGGGTTGTGCTCAATGAGGTC 3693 >seq127 Length=36082 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 29807 GTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTT 29866 |||||| ||| | |||||||| ||| | ||| || ||| |||| ||||| ||||||| Sbjct 865 GTTCCAAGTGGTTCAGGTAGAGGTGTGTGTCGCCGGTGGTATGGATGAACTCACCCGGTT 924 Query 29867 CTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGG 29926 || || || || |||||||||||| | || || | || ||| ||||| |||| Sbjct 925 TCAGTCCCGTCACCTGAGCCATCATGAGCAGCAGCAGGGCATACGAGGCAATGTTGAAGG 984 Query 29927 GTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGC 29986 | || ||||| | || |||| | |||||||||||| ||| || || |||| | Sbjct 985 GAACGCCGAGGAAGGTATCGGCCGAACGCTGGTAGAGCTGCAGCGAAAGTTCACCGTTGG 1044 Query 29987 TCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || || ||||| ||||||| ||||| || ||||| ||||| Sbjct 1045 CAACATAGAACTGGAACATGGTATGGCAGGGCGGAAGCGCCAT 1087 >seq4293 Length=67978 Score = 113 bits (124), Expect = 4e-20 Identities = 206/302 (68%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 29821 AGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29880 ||||||| ||| | ||| ||| |||||||| || || ||||| | |||||| | Sbjct 67219 AGGTAGATGTGGGTGTCGCCCGTGGTGTGGATGAATTCGCCCGGAGCCAGCCCGCACTCC 67278 Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940 || || ||||| ||||| || |||||| ||||||||| ||||| || || || Sbjct 67279 TGTGCTATCATCATGGTGAGCAGCGAGTAGGAGGCGATGTTGAAGGGCACGCCCAGGAAG 67338 Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30000 ||||| | | |||||||||||| || ||| ||||| ||| || ||||| Sbjct 67339 GTGTCCGCGCTGCGCTGGTAGAGCTGGCAGCTGAGGCGGCCGTCCGCCACATAGAACTGG 67398 Query 30001 CACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30060 | | | ||||||||| ||||| ||||| | | ||| || ||||||||| ||| | Sbjct 67399 AAGAGGCAGTGGCACGGGGGAAGCGCCATCATGTCCACCTCGCCGGGGTTCCATGCGGAT 67458 Query 30061 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGA 30120 ||||||| ||| | | || || ||| | | || |||| | | | || | |||||| Sbjct 67459 ACGATGAGGCGGCGGCTGTCCGGATTGCTTTTTATCTGGTCGATGACATTCTTCAGCTGG 67518 Query 30121 TC 30122 || Sbjct 67519 TC 67520 >seq2451 Length=31860 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 29823 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29882 ||| | ||| | |||||| ||||| || |||||||| || | || |||||||| || Sbjct 18280 GTACAGGTGCGTATCTCCCGTCGTGTGCACGAACTCTCCGGGCTGCAGGCCGGTGACCTG 18339 Query 29883 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 29942 ||||||||| ||| || || | |||| ||| ||||| ||||| || || || || Sbjct 18340 GGCCATCATGAGCGTAAGCAGCGCGTAGGAGGCTATGTTGAAGGGAACGCCCAGGAACAC 18399 Query 29943 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30002 ||| | | ||| || ||||| || || || | |||| || |||||| ||||| | Sbjct 18400 GTCGGCGCTGCGCTGATACAGCTGGCAGGACAGTTTTCCGCCGGCCACGTAGAACTGGAA 18459 Query 30003 CATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30056 || | |||||| || || || ||||| || ||| || ||||||||||| Sbjct 18460 CAGGCAGTGGCAGGGGGGCAGGGCCATCTGGTCCACCTCGGCCGGGTTCCAGGC 18513 >seq3719 Length=49728 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 29790 GAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG 29849 |||||| ||||| | |||| | ||| | ||||| || |||| || | ||| || Sbjct 23601 GAGCTGCAGCTTCACCTGTTCGATGTGGTTGTTGTAGATATGCACGTCGCCGAAGGTATG 23660 Query 29850 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29909 ||| || || || ||||| || || || ||||||||||| || || || || || Sbjct 23661 GACGAAATCACCGGGTTCGAGATCGCACACCTGAGCCATCATCATGGTCAGCAGCGAATA 23720 Query 29910 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 |||||||| || || || ||||| || ||| |||| | ||||| ||||| || Sbjct 23721 CGAAGCGATGTTGAACGGCACGCCGAGAAACACGTCGGCCGAGCGTTGGTAAAGCTGGCA 23780 Query 29970 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCC 30027 ||| |||| |||| ||| || ||||| | | || || || ||||| || ||| Sbjct 23781 CGACAGCTTGCCGTTTGCCACATAGAACTGGAAGAAGGCATGACAGGGAGGCAGTGCC 23838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408592206842327