Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq2964 122 9e-23 seq2701 86.0 7e-12 >seq2964 Length=2227 Score = 122 bits (134), Expect = 9e-23 Identities = 510/792 (64%), Gaps = 15/792 (2%) Strand=Plus/Minus Query 59179 GGATTGATTCATAAAACTAATAAAGACCTTTTGAACGAGAATGCTAATAAAGATTCTCGT 59238 ||| |||| || | | ||| ||| || | ||||||||||| || || || Sbjct 1888 GGACTGATCGATCAGTCAAATGCAGATCTGCTTAACGAGAATGCCAACAAGGACAGCAAG 1829 Query 59239 GTTTTTCCAACTCAACGGGACCTTATGGCTGGTATTGTGTCTAAGCACATTGCCAAAAAT 59298 ||| |||| || || || |||||| | || |||||||| | ||| ||| ||| | Sbjct 1828 GTTATTCCGACCCAGCGTGACCTTCTTGCAGGTATTGTTGCACGCCACTATGCAAAACAG 1769 Query 59299 ---ATGGTCCCGTCTTTTA-TTATGAAAGCACATGAAAGCGGAATTATCCATTTCCATGA 59354 ||| | || || | || ||| ||| |||||||| || |||||||| || || Sbjct 1768 CACATGCTTCC-TCAGGAAGTTGTGAGAGCCCATGAAAGAGGGGAGATCCATTTTCACGA 1710 Query 59355 TATTGATTATTCCCCTGCTCTTCC--ATTTACTAATTGCTGTTTAGTAGATTTAAAAGGA 59412 | | || ||||| || | |||||| || | | | | || | | | ||| | ||| Sbjct 1709 TCTCGACTATTCACC-GTTCTTCCCGATGTTCAACTGTATGCTGA-TCGATGTCGGCGGA 1652 Query 59413 ATGCTTGAAAACGGGTTTAAGCTAGGTAATGCTCAAATTGAAACGCCTAAATCGATTGGT 59472 ||||| ||| ||| || ||| | |||||||| |||| ||| | ||||| || || || Sbjct 1651 ATGCTGGAACGCGGTTTCAAGATGGGTAATGCCGAAATCGAATCACCTAAGTCAATCAGT 1592 Query 59473 GTTGCTACTGCAATTATGGCACAAATTACCGCACAGGTTGCTTCACATCAGTACGGCGGA 59532 || || || ||| ||||| || | ||| |||||||| ||| |||||||| Sbjct 1591 ACCGCAACCGCGGTTACCGCACAGATCATCGCCCAGGTTGCCAGCCATATCTACGGCGGT 1532 Query 59533 ACGACTTTTG-CTAATGTAGATAAAGTACTTTCTCCTTATGTTAAACGCACCTATGCAAA 59591 || || | | ||| ||| | || ||| | || ||||||| | | | || Sbjct 1531 ACAACCATCAACCGCTGT-GATGAGGTGCTTGCCCCGTATGTTA--CCAAGAGTTTCATG 1475 Query 59592 ACATATT-GAGGATG-CAGAAAAATGGCAAATCGCTGATGCGTTGAATTATGCCCAATCT 59649 | ||| || |||| | || | ||||| || ||||| || | | ||||| | | Sbjct 1474 AAGTATCAGAAGATGGCCGAGGAGTGGCACATTCCTGATCCGGACAGCTTTGCCCGAGCC 1415 Query 59650 AAAACAGAAAAAGACGTATACGATGCATTTCAAGCTTATGAGTATGAAGTAAATACTCTT 59709 || ||||| || || || || || || || ||| ||||||||||| || || Sbjct 1414 CGTACTGAAAAGGAGTGCTATGACGCCTTCCAGTCTCTTGAATATGAAGTAAACACCCTG 1355 Query 59710 TTTAGCTCAAACGGTCAAACGCCTTTTGTAACAATTACATTTGGTACTGGAACTGACTGG 59769 || ||| |||||||| || || || ||||| | || ||| ||||| |||| Sbjct 1354 CATACCTCCAACGGTCAGACTCCGTTCGTAACTCTCGGTTTCGGTCTGGGAACATCCTGG 1295 Query 59770 ACTGAACGAATTATTCAGAAAGCAATTCTTAAAAACCGCATTAAAGGCCTTGGTCGTGAT 59829 ||| | || ||||| | ||||| || ||| | ||| || || || || || Sbjct 1294 GAGTCACGTCTGATCCAGAAGTCTATTCTGAAGAACAGAATTGCTGGTCTCGGCCGCAAT 1235 Query 59830 GGAATAACTCCTATTTTCCCTAAACTTGTTATGTTCATTGAAGAGGGTGTCAATCTTTAT 59889 | |||| | |||||||||| || || | ||| | ||||| | || | | | Sbjct 1234 CACAGAACTGCGGTTTTCCCTAAGCTGGTGTTTGCCATCAAGGAGGGACTGAACCGTAAA 1175 Query 59890 AAAGACGACCCGAACTATGATATTAAGCAGCTTGCTCTAGAGTGTGCAAGCAAAAGAATG 59949 | | || || ||||| ||||| ||| |||| ||||| || || || ||| |||||| Sbjct 1174 GAGGGTGATCCTAACTACGATATCAAGAAGCTGGCTCTTGAATGCGCCTCCAAGAGAATG 1115 Query 59950 TATCCTGATATT 59961 ||||| |||||| Sbjct 1114 TATCCGGATATT 1103 >seq2701 Length=6067 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 || ||||| || ||||| || |||||||| | ||||| ||| |||||| | | Sbjct 5187 GGCGGTCAGCATCTGAATGTGAACGTTCTCAACAGAGAAACACTGCTCGATGCAATGGAA 5246 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 || || ||||||||||| ||||| |||||||| || |||||||| || || || ||| Sbjct 5247 CACCCTGAAAAATATCCTACACTGACAATCCGTGTTTCAGGTTATGCTGTACGTTTCAAC 5306 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTT 43871 ||| | || |||||||||| || ||| Sbjct 5307 TCTTTAACCAAAGAACAGCAGCAGGATGTT 5336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541143106692720