Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_019399.1 Length=167396 Score E Sequences producing significant alignments: (Bits) Value seq2964 129 6e-25 seq2701 93.3 5e-14 >seq2964 Length=2227 Score = 129 bits (142), Expect = 6e-25 Identities = 619/960 (64%), Gaps = 38/960 (4%) Strand=Plus/Plus Query 44231 GCAATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 44290 || |||||||| |||||||| |||| ||||| ||||| ||||| || || | || | | Sbjct 951 GCGATACGAGGCAGATTCAGACTTACCACACCCAGATTGTTACGGCCGTCGTGGATCTGA 1010 Query 44291 TTACCAGTCGAATCTTTCCATACGCT-CAAGAAACTA-CGGCAACCCATTGGAGAAACAG 44348 ||| || || | |||||| | || || | ||||| ||||| |||| | Sbjct 1011 ACACCGTTC---TCCT--CATACGGGGCGAGGAATGAGCGGCAGCCCATCGGAGT--CTT 1063 Query 44349 GAACAGATGAACCAGTGATAGCTTTAT----TGTTCTTAGCTGAAATAATATCAGGATAC 44404 ||| |||||| || | ||| | || || ||| | | | ||||| |||||| Sbjct 1064 GAA----TGAACCGGTAAC--CTTCACAACCTGATCGTAGTTCAGA--ATATCCGGATAC 1115 Query 44405 ATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTG 44464 || || ||| || || || ||||| |||| ||| ||||| ||||| ||||| | | Sbjct 1116 ATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTAGGATCACCCTCT 1175 Query 44465 TAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAAAATAGGAGTTATCCCA 44524 | | | || | || || | | | | || ||||||||||||| | |||| | | Sbjct 1176 TTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAACCGCAGTTCTGTGA 1235 Query 44525 TCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTC 44584 | || |||||||| ||| | || |||||||| | ||||| |||| ||| | Sbjct 1236 TTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGATCAGACGTGACTCC 1295 Query 44585 CAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCCGTTTGAACTAAAG 44644 ||| ||||| ||| || | ||||| || || || || ||||| || || Sbjct 1296 CAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACCGTTGGAGGTATGC 1355 Query 44645 AGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACATCTTTTTCTGTTTTA 44704 || || ||||||||||||||| || ||||| || || || || ||||| || Sbjct 1356 AGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCCTTTTCAGTACGG 1415 Query 44705 GATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG-CATCCTC-AATATGTT 44762 | | | ||| | | || ||||| || ||||| | || | |||| || ||| | Sbjct 1416 GCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATCTTCTGATACTTC 1475 Query 44763 TTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG-CAAAAGTCGTT 44821 || | | | ||||||| || | ||| || | ||| ||| | | || || Sbjct 1476 ATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCGGTTGATGGTTGTA 1532 Query 44822 CCGCCGTATTGGTGGGAAGCAACTTGCGCAGTAATTTGTGCCATAATTGCAGTAGCAACA 44881 |||||||| ||| ||||| || || | || ||||| ||| || || || | Sbjct 1533 CCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAACCGCGGTTGCGGTA 1592 Query 44882 CCGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAATCCGTTCTCAAGCATT 44941 | |||||| ||||| | ||| || | |||||||| | ||| || ||| || |||||| Sbjct 1593 CTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACCGCGTTCCAGCATT 1652 Query 44942 CCTTTTAAATCTACTAAACA-ACAATTAGTAAAT--GGAAGAGCAGGGGAATAATCAATA 44998 || | ||| | | | || ||| || | | || |||||| | || ||||| || | | Sbjct 1653 CCGCCGACATCGA-TCAGCATACAGTT-GAACATCGGGAAGAAC-GGTGAATAGTCGAGA 1709 Query 44999 TCGTGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAGACGGGACCAT--- 45054 ||||| |||||||| || |||||||| ||| ||| || | || || | ||| Sbjct 1710 TCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA-GGAAGCATGTG 1768 Query 45055 ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAAC 45114 | ||| ||| ||| | |||||||| || | |||||| || || || |||| ||| Sbjct 1769 CTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTGGGTCGGAATAAC 1828 Query 45115 ACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTTATGAATCAATCC 45174 || || || ||||||||||| | || ||| ||| | | || |||| ||| Sbjct 1829 CTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTGATCGATCAGTCC 1888 >seq2701 Length=6067 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 61397 ATTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 61456 |||||| ||| ||||| || | | | ||| || |||||||||| || | || Sbjct 5367 ATTACAGCTTCTGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAG 5308 Query 61457 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 61516 |||| || || || |||||||| || |||||||| ||||| ||||||||||| || | Sbjct 5307 AGTTGAAACGTACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGT 5248 Query 61517 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 61576 | | | |||||| ||| ||||| | |||||||| || ||||| || ||||| | Sbjct 5247 GTTCCATTGCATCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGC 5188 Query 61577 CTTC 61580 |||| Sbjct 5187 CTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535505066070240