Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq2771 113 1e-19 seq2941 96.9 8e-15 seq2619 95.1 3e-14 seq1743 95.1 3e-14 >seq2771 Length=4488 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 150605 ATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCG---GCGGT 150661 |||||||| || |||||||| ||||| || ||||||| ||||| || || | ||||| Sbjct 998 ATTCTGTTTATTGATGAAATTCATACCATAGTGGGTGCCGGTGCCACCGGAGAAAGCGGT 1057 Query 150662 TCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATC 150721 ||||| | |||||| | |||||| | || | ||||||||| | | |||| Sbjct 1058 A---TGGATGCAGGTAATATGCTCAAACCTTCACTTGCCCGCGGTGAACTGCACTGCATC 1114 Query 150722 GGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGT 150781 |||||||| ||| |||||||| | || | || ||||| ||||| || || ||||| Sbjct 1115 GGTGCAACCACCCTTGATGAATACAGAAAGTATATCGAAAAGGATGCCGCCCTGGAGCGT 1174 Query 150782 CGTTTCATGAAGGTTGATATTGTTGAACCGAC 150813 |||||| ||||||| | | | ||| ||||| Sbjct 1175 CGTTTCCAGAAGGTTTTTGTGGATGAGCCGAC 1206 >seq2941 Length=2426 Score = 96.9 bits (106), Expect = 8e-15 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 284187 GGGATGTGGTGAAATTGGCAGACACGCCAGATTTAGGTTCTGGTTCTTCGGAGTGCGAGT 284246 |||| |||| |||||||| |||| |||||||||||||||||||| ||||| ||| |||| Sbjct 2170 GGGA-GTGGCGAAATTGGTAGACGCGCCAGATTTAGGTTCTGGTGTTTCGGCGTGAGAGT 2112 Query 284247 TCGAGTCTCGCCATCCCCACCATATTTGGA 284276 ||||||||| || || ||||||| |||| Sbjct 2111 TCGAGTCTCTCCCCCCGCACCATAACTGGA 2082 >seq2619 Length=11042 Score = 95.1 bits (104), Expect = 3e-14 Identities = 198/291 (68%), Gaps = 12/291 (4%) Strand=Plus/Minus Query 133907 AAAAATAATCCTGATTCTCGACG--TCATATTCTAACTGCATGGAATGTTGGTGAACTAG 133964 || || ||||||||||| |||| |||| | | | || ||||||| || ||| | | Sbjct 2585 AAGAACAATCCTGATTCCAGACGGATCATCGTTTCA--GCCTGGAATGCCGGAGAAATTG 2528 Query 133965 ATAAAATGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTC----GTAAATGACGGT 134020 |||| ||| | || | || |||||| ||| | || | | || || ||| || Sbjct 2527 ATAAGATGGCATTAGCTCCTTGTCAT-GCTCTTTTCCAGTTTTATGTAGTTAATAAC--- 2472 Query 134021 AAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAAC 134080 || ||||| || | ||||| || ||||||||| | || | || || || ||||| Sbjct 2471 AAATTATCTTGCCAGTTGTATCAGCGAAGCTGTGATGTCTTTCTTGGTGTTCCTTTCAAT 2412 Query 134081 ATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGT 134140 |||||| ||| | | || ||||||||| | || || || | | || |||||| Sbjct 2411 ATTGCTAGTTATGCTCTTCTTACTCATATGATGGCGCAGCAGTGCGATCTTGATGTTGGT 2352 Query 134141 GAGTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCACGTAGAA 134191 || ||||| |||| || |||||||||||| | ||| ||||||| | ||| Sbjct 2351 GATTTTGTTTGGACCGGCGGAGATGTTCACTTATATTCAAATCACCTGGAA 2301 >seq1743 Length=32413 Score = 95.1 bits (104), Expect = 3e-14 Identities = 289/439 (66%), Gaps = 17/439 (4%) Strand=Plus/Minus Query 150359 ATTCAGATTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTG 150416 |||| ||||| |||||| || || || ||| ||| | ||| | ||||| || |||| Sbjct 28992 ATTCGTATTCTCAGTCGTAAGACAAAGAATAATCCGGTAC-TTA-TCGGTGAGCCCGGTG 28935 Query 150417 TTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAG 150476 ||||||| || | | || || || |||||||| || || | | ||||| || || | Sbjct 28934 TTGGTAAGACGGCAGTGGTAGAAGGCTTAGCACAGCGTATAGTCAGAGGTGACGTGCCGG 28875 Query 150477 ATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTA 150536 || | | ||| || || | ||||| | | || ||| || | | ||| ||| | | Sbjct 28874 ATGCCCTAAAAAATAAAAAAGTATTTTCTCTCGAAATCGGTTCAATGATTGCAGGTGCAA 28815 Query 150537 AGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGA--- 150591 | |||| || ||||| || ||| | | || || |||| | ||| | || | Sbjct 28814 AATATCAGGGAGAATTTGAGGAAAGACTCAAGGCA--GTGCTGGATGAAATCAAGAATTC 28757 Query 150592 ACGCGATGATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGAC 150651 | || ||| ||||||| || || ||||| | |||||||| || || || ||| | Sbjct 28756 AGACGGTGAGATTATTCTCTTTATAGATGAGTTGCATACTATAATCGGCGCCGGTAAAAA 28697 Query 150652 TGGC---GGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGA 150708 |||| ||||| ||||| |||||||| | |||||| || | || || || Sbjct 28696 TGGCAATGGCGG---CCTGGATGCCGGCAATATGCTTAAACCTATGCTTGCCCGTGGAGA 28640 Query 150709 AATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGC 150768 | | | ||| || || || || ||||||||| | || | || ||||||||||| Sbjct 28639 GCTGCATTGCATTGGCGCTACCACGCTTGATGAATATAGAGAATATATAGAAAAAGATGC 28580 Query 150769 AGCACTACAGCGTCGTTTC 150787 ||||| |||| |||||| Sbjct 28579 GGCACTGGAGCGACGTTTC 28561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147515426843302