Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq3706 109 1e-18 seq1617 93.3 8e-14 seq143 89.7 9e-13 seq3713 87.8 3e-12 >seq3706 Length=88543 Score = 109 bits (120), Expect = 1e-18 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 132959 TGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTC 133018 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct 6229 TGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTGGGCTCATAACCCAAAGGTCGGTGGTTC 6170 Query 133019 AAATCCCTCCCCCGC 133033 |||||| ||||||| Sbjct 6169 AAATCCGCCCCCCGC 6155 >seq1617 Length=21086 Score = 93.3 bits (102), Expect = 8e-14 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 132962 TGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAA 133021 |||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||| Sbjct 13161 TGCGGGGTGGAGCAGT--GGTAGCTCGTTGGGCTCATAACCCAAAGGTCGGAGGTTCAAT 13104 Query 133022 TCCCTCCCCCGCATCCACAA 133041 ||| |||||||| ||| || Sbjct 13103 TCCTTCCCCCGCTACCAAAA 13084 >seq143 Length=132465 Score = 89.7 bits (98), Expect = 9e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 ||||||| |||||||| |||||||| | ||||||||||| ||||||| ||||||||| Sbjct 76212 GCGGGGTAGAGCAGTCTGGTAGCTCATCAGGCTCATAACCTGAAGGTCGTCGGTTCAAAT 76153 Query 133023 CCCTCCCCCGCATCCAC 133039 || ||||||||| |||| Sbjct 76152 CCTTCCCCCGCAACCAC 76136 >seq3713 Length=61278 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 71168 GAGATCGTGCCCTTCGAGTTCATGCGCGGGCGCACCTTCGACAACGCCTTCGTGATCCTC 71227 ||||| | || || | ||||||||||| |||||| ||||| ||||||||||||| ||| Sbjct 55114 GAGATAGCACCGTTGGCATTCATGCGCGGACGCACCCTCGACCACGCCTTCGTGATTCTC 55055 Query 71228 GACGAGGCTCAGAACGCG 71245 |||||||||||||| ||| Sbjct 55054 GACGAGGCTCAGAATGCG 55037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895709306089080