Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq2964 134 1e-26 seq2701 93.3 4e-14 >seq2964 Length=2227 Score = 134 bits (148), Expect = 1e-26 Identities = 513/792 (65%), Gaps = 15/792 (2%) Strand=Plus/Plus Query 42028 AATATCAGGATACATTCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 42087 |||||| ||||||||||| ||| || || || ||||| |||| ||| ||||| ||||| Sbjct 1103 AATATCCGGATACATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTT 1162 Query 42088 CGGATCGTCTTTATAAAGATTAACGCCTTCTTCAACGAACATAACAAGCTTAGGGAAAAT 42147 ||||| | | | | | || | || || | | | | || ||||||||||||| Sbjct 1163 AGGATCACCCTCTTTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAAC 1222 Query 42148 AGGAGTTATCCCATCGCGACCAAGACCTTTAATGCGATTTTTCAGAATTGCTTTCTGAAT 42207 | |||| | || ||| || ||||| ||| | || |||||||| | ||||| || Sbjct 1223 CGCAGTTCTGTGATTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGAT 1282 Query 42208 CATTCGTTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCC 42267 || ||| |||| |||||| ||| || | ||||| || || || || || Sbjct 1283 CAGACGTGACTCCCAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACC 1342 Query 42268 ATTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCATATACATC 42327 || || || || || ||||||||||||||| || ||||| || ||||| || Sbjct 1343 GTTGGAGGTATGCAGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTC 1402 Query 42328 TTTTTCTGTTTTAGATTGGGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG-CAT 42386 ||||| || | | ||||| | | || ||||| || ||||| | || | ||| Sbjct 1403 CTTTTCAGTACGGGCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCAT 1462 Query 42387 CCTC-AATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTC 42445 | || ||| | || | | | ||||||| || | ||| || | ||| ||| Sbjct 1463 CTTCTGATACTTCATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCG 1519 Query 42446 G-CAAAAGTCGTTCCGCCATATTGATGAGAAGCAACCTGTGCAGTAATTTGTGCCATAAT 42504 | | || || ||||| || ||| |||||||| || | || ||||| ||| Sbjct 1520 GTTGATGGTTGTACCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAAC 1579 Query 42505 TGCAGTAGCAACGCCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCC 42564 || || || | |||||| ||||| | ||| || | |||||||| | ||| || || Sbjct 1580 CGCGGTTGCGGTACTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACC 1639 Query 42565 GTTTTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAAT--GGAAGAGCAGGG 42622 | ||| |||||||| | ||| | | | || | | | | || |||||| | || Sbjct 1640 GCGTTCCAGCATTCCGCCGACATCGA-TCAGCATACAGTTGAACATCGGGAAGAAC-GGT 1697 Query 42623 GAATAATCAATATCATGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAGA 42681 ||||| || | ||| || |||||||| || |||||||| ||| ||| || | || Sbjct 1698 GAATAGTCGAGATCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA 1757 Query 42682 CGGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTTG 42738 || | ||| | ||| ||| ||| | |||||||| || | |||||| || || Sbjct 1758 -GGAAGCATGTGCTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTG 1816 Query 42739 AGTTGGAAAAACACGAGAATCTTTATTGGCATTCTCGTTTAAAAGGTCTTTATTAGTTTT 42798 || |||| ||| || || |||||||||||||| | || ||| ||| | | Sbjct 1817 GGTCGGAATAACCTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTG 1876 Query 42799 ATGAATCAATCC 42810 || |||| ||| Sbjct 1877 ATCGATCAGTCC 1888 >seq2701 Length=6067 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 60070 ATTACAAGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60129 |||||| ||| ||| || || | | | ||| || |||||||||| || | || Sbjct 5367 ATTACAGCTTCTGAGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAG 5308 Query 60130 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 60189 |||| || || || |||||||| || |||||||| ||||| ||||||||||| || | Sbjct 5307 AGTTGAAACGTACAGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGT 5248 Query 60190 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 60249 | | | |||||| ||| ||||| | |||||||| || ||||| || ||||| | Sbjct 5247 GTTCCATTGCATCGAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGC 5188 Query 60250 CTTC 60253 |||| Sbjct 5187 CTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532634849022360