Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_019507.1 Length=182833 Score E Sequences producing significant alignments: (Bits) Value seq240 104 3e-17 seq1731 95.1 1e-14 seq3952 93.3 5e-14 seq3314 93.3 5e-14 seq121 93.3 5e-14 seq4937 86.0 7e-12 >seq240 Length=9876 Score = 104 bits (114), Expect = 3e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 100535 AGTTAAACTTATCTATATTGATCCACCTTATAATACAGGCAATACTAGTTTTAATTATAA 100594 ||| || || || |||||||| || || |||||||| || | || ||| ||||| Sbjct 3375 AGTGAAGCTAATATATATTGACCCTCCATATAATACGGGGAGCGACAGCTTTGGATATAA 3434 Query 100595 CGACAAATTTAAACACACTACTTGGCTTACTTTTATGAAAAATCGCCTTGAAATTGCTAG 100654 |||||| ||||| ||| | || ||||| || |||||||| ||| | || || | || || Sbjct 3435 CGACAACTTTAACCACTCGACGTGGCTGACGTTTATGAAGAATAGGCTGGAGGTGGCGAG 3494 Query 100655 GGAATTTTTAAGAGATGATGGTGTAATATTCGT-TCAATGTGACGATAACGAGCAAGCGT 100713 ||| || | | || ||||| | ||| || | || || |||||||| || ||||||| Sbjct 3495 GGAGTTGCTGAAGGAAGATGGGGGAATGTTTATCTCGAT-AGACGATAAGGAACAAGCGT 3553 Query 100714 ATTTAAAAGTACTT 100727 ||||||| || ||| Sbjct 3554 ATTTAAAGGTGCTT 3567 >seq1731 Length=76336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 167468 GTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAACCAG 167527 |||||||||| ||||||||||||| || |||| ||||||||||||| |||| ||| ||| Sbjct 59076 GTCGGGGTGACAGGATTCGAACCTGCGACCCCCTGGTCCCAAACCAGGTGCTCTAGCCAA 59017 Query 167528 ACTGCGCTACACCCCGA 167544 |||| || ||||||||| Sbjct 59016 ACTGAGCCACACCCCGA 59000 >seq3952 Length=6226 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 167469 TCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAACCAGA 167528 ||||||||| ||||||||||||| || |||| ||||||||||||| |||| ||| ||| | Sbjct 930 TCGGGGTGACAGGATTCGAACCTGCGACCCCCTGGTCCCAAACCAGGTGCTCTAGCCAAA 989 Query 167529 CTGCGCTACACCCCGA 167544 ||| || ||||||||| Sbjct 990 CTGAGCCACACCCCGA 1005 >seq3314 Length=12619 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 167468 GTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAACCAG 167527 |||||||||| ||||||||||||| || | || ||||||||||||| ||||||| ||| | Sbjct 12572 GTCGGGGTGACAGGATTCGAACCTGCGACACCCTGGTCCCAAACCAGGTGCGCT-ACCGG 12514 Query 167528 ACTGCGCTACACCCCG 167543 ||||||||||||||| Sbjct 12513 GCTGCGCTACACCCCG 12498 >seq121 Length=94419 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 167468 GTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAACCAG 167527 ||||||| || ||||||||||||| || || | ||||||||||||| | ||||| ||| | Sbjct 371 GTCGGGGCGACAGGATTCGAACCTGCGACCGCCTGGTCCCAAACCAGGAGCGCT-ACCGG 429 Query 167528 ACTGCGCTACACCCCGAA 167545 |||||||||||||||||| Sbjct 430 ACTGCGCTACACCCCGAA 447 >seq4937 Length=6770 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/76 (87%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 167468 GTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAACCAG 167527 |||||| ||| ||||||||||||| || | ||||||||||||||||| ||||| ||||| Sbjct 83 GTCGGGATGACAGGATTCGAACCTGCGACATCTTGGTCCCAAACCAAGCGCGCT-ACCAG 141 Query 167528 ACTGCGCTACACCCCG 167543 |||||||||| |||| Sbjct 142 -CTGCGCTACATCCCG 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584900317539720