Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq152 95.1 1e-14 seq4050 91.5 2e-13 seq4608 89.7 5e-13 seq4740 84.2 2e-11 seq2216 84.2 2e-11 seq842 84.2 2e-11 seq37 84.2 2e-11 seq4987 82.4 8e-11 seq2580 82.4 8e-11 >seq152 Length=50040 Score = 95.1 bits (104), Expect = 1e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 23329 TGGCGGAATCGGTAGACGCACCAGACTTAAAATCTGTTGGGCATTAGCCCGTGGGAGTTC 23388 ||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||||| Sbjct 8437 TGGCGGAATCGGTAGACGCTGCAGACTTAAAATCTGTTGGGATTTATCCCGTGCGAGTTC 8496 Query 23389 AAGTCTC-CCTA 23399 ||||||| |||| Sbjct 8497 AAGTCTCGCCTA 8508 >seq4050 Length=57342 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 17048 GGTTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAG 17107 ||||| |||||||||||||||||||||||||||||||||||||| || | | |||||||| Sbjct 43937 GGTTCCGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGCCTCGGGTTCGAG 43996 Query 17108 TCCAGCCTGAATC 17120 || | | ||||| Sbjct 43997 CCCCGACGGAATC 44009 >seq4608 Length=10154 Score = 89.7 bits (98), Expect = 5e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 28884 GATTAGCTCAGC-GGTAGAGCATCTCGTTTACACCGAGGCGGTCGGCGGTTCAATCCCGT 28942 |||||||||||| || ||||||||||||||||||||||| ||||||| ||||||||| || Sbjct 9750 GATTAGCTCAGCTGGGAGAGCATCTCGTTTACACCGAGGAGGTCGGCAGTTCAATCCTGT 9691 Query 28943 CATC 28946 |||| Sbjct 9690 CATC 9687 >seq4740 Length=4259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 17047 TGGTTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGA 17106 |||| | ||||||||||||||||||||||| ||||||||||| || |||||| |||||| Sbjct 4184 TGGTCCCGTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCGCGTTCGA 4243 Query 17107 GTCCAGCCTGAATC 17120 ||| ||| | ||| Sbjct 4244 GTCGCGCCGGGATC 4257 >seq2216 Length=5131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 17055 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAGTCC 17110 ||||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct 4445 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGCCGGAGGTTCGAGTCC 4500 >seq842 Length=6115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 17047 TGGTTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGA 17106 |||||| ||||||||| ||||||||||||| ||||||||||| || |||| | ||||||| Sbjct 850 TGGTTCCGTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCTCGGGTTCGA 791 Query 17107 GTCCAGCCTGAATC 17120 ||| | | ||||| Sbjct 790 ATCCCGACGGAATC 777 >seq37 Length=26425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 26900 TTATATAGTAATGCGCAAGTGGCGGAATTGGTAGACGCCCAGGTTTTAGGTACCTGTGCC 26959 |||||| | ||||| ||||||||||||||||||||||| || |||| |||| | |||| Sbjct 6864 TTATAT-GAAATGCCCAAGTGGCGGAATTGGTAGACGCGCACGTTTCAGGTGCGTGTG-T 6921 Query 26960 CTAGTGGCGTGAAGGTTCAAGTCCTTTCTTGCGCATCAGT 26999 | || | |||| |||||| |||||| | ||| ||| |||| Sbjct 6922 CGAGAGACGTGCAGGTTCGAGTCCTGTTTTGGGCA-CAGT 6960 >seq4987 Length=240000 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17048 GGTTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAG 17107 ||||||||||||||| ||||||||||||| ||||||||||| || |||| ||||||| Sbjct 27944 GGTTCAGTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCTTGGGTTCGAA 27885 Query 17108 TCCAGCCTGAATC 17120 ||| ||||||| Sbjct 27884 TCCCAACTGAATC 27872 >seq2580 Length=1271 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17048 GGTTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAG 17107 ||||| ||||||||| ||||||||||||| ||||||||||| || |||| | ||||||| Sbjct 280 GGTTCCGTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCTCGGGTTCGAA 221 Query 17108 TCCAGCCTGAATC 17120 ||| | | ||||| Sbjct 220 TCCCGACGGAATC 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516447080856000