Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq3875 141 1e-28 seq2665 105 9e-18 seq8 104 3e-17 >seq3875 Length=62153 Score = 141 bits (156), Expect = 1e-28 Identities = 354/529 (67%), Gaps = 18/529 (3%) Strand=Plus/Plus Query 139502 AAACAGTTATTACCTGTATACGATAAACCAATGATTTACTATCCATTGACAACTCTTATC 139561 || ||| || | ||| |||| || || |||||||||||||||||||| | || ||||| Sbjct 1541 AAGCAGATAATGCCTATATATGACAAGCCAATGATTTACTATCCATTATCTACACTTATG 1600 Query 139562 GAAGCTGGTATAAACGAAATACTTATAATATCAACACC-ACAGGATAGAAATTCTTTCGA 139620 |||||||| || | ||||| || || ||||| | || | | | ||| | Sbjct 1601 TTGGCTGGTATCCGAGAGGTGCTTATTATCTCTACACCTAGAGATTTGCCTGTATTTAGG 1660 Query 139621 GAACTTACTAGGTAACGGTTCACAATTTGGTGTTAGAATAGAATACGCTGTTCAAGAAAA 139680 |||||| || ||| | || ||||| ||||| | || |||| |||||||| || Sbjct 1661 GAACTT-CTGGGTGATGGATCACAGCTTGGTATGGATATTCAATATGCTGTTCAGGAGGC 1719 Query 139681 ACCTAATGGTTTAGCACAAGCTTTCGTTATCGGTGAAGAATTCATAGGTAAATCTAAAGT 139740 || |||||| | || | || || | || ||||| || || ||||| | || Sbjct 1720 GCCAAATGGTCTCGCTGAGGCGTTTATAATTGGTGAGAGTTTTATCGGTAATGATGCTGT 1779 Query 139741 AGCTCTGATTTTAGGTGACAACATTTTCCATG--CTTCTAATATAGATAG-ATTACTTAT 139797 |||||| || | || || || |||||| ||| | | | | || | ||| ||| Sbjct 1780 AGCTCTTGTTCTTGGCGATAATATTTTCTATGGACAGTCATTCTCGAAGGTATTGCTTTC 1839 Query 139798 GGAAGCTAATATGT-CTGATAAAAA---------TACGATATTTGCATATCGTGTAAATG 139847 | ||| || | || |||| | | |||||| |||| ||| ||| || Sbjct 1840 TGCAGC-AACACGTACTGAGAGTCAGCCCGGGGCTACGATTTTTGGCTATTATGTTCGTG 1898 Query 139848 ATCCTCA-GAGATATGGTGTAGTTGAATTCGATGAATATGATAACGCTGTTTCGATCGAA 139906 |||||| ||| ||||| ||||| ||||| || || ||| | ||| |||| ||||| Sbjct 1899 ATCCTCGTGAG-TATGGCGTAGTAGAATTTGACGAGAATGGTGTGGCTATTTCTATCGAG 1957 Query 139907 GAAAAACCTTTGAATCCTAAATCTAATTACGCAGTACCAGGCTTATATTTCTATAATAAC 139966 || || || |||||| || |||||| || || || || | ||||||||| |||| Sbjct 1958 GAGAAGCCAGAGAATCCAAAGAGTAATTATGCTGTTCCGGGTCTGTATTTCTATGATAAT 2017 Query 139967 GATGTTATCGAAGTAGCTAAGACTATCAAACCTTCAGCTCGTGGAGAAT 140015 |||| | ||| | || ||||| ||||| |||||||||||||| |||| Sbjct 2018 TCTGTTGTAGAAATCGCAAAGACAATCAAGCCTTCAGCTCGTGGCGAAT 2066 >seq2665 Length=7310 Score = 105 bits (116), Expect = 9e-18 Identities = 202/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 139439 AAAGGAATTATTTTAGCAGGTGGGTCTGGGACCCGCTTGCATCCATTGACTATCAGTGTT 139498 |||||||||||| |||||||||| || || || | | |||| || || | || Sbjct 3086 AAAGGAATTATTCTAGCAGGTGGTTCAGGCACGAGACTATATCCGTTAACAACGGCGGTC 3145 Query 139499 TCGAAACAGTTATTACCTGTATACGATAAACCAATGATTTACTATCCATTGACAACTCTT 139558 ||||| || | || ||||||| ||||| ||||| || ||||| || ||||||| Sbjct 3146 AATAAACAATTGCTGCCCATATACGACAAACCCATGATCTATTATCCGCTGGCAACTCTG 3205 Query 139559 ATCGAAGCTGGTATAAACGAAATACTTATAATATCAACACCACAGGAT-AGAAATTCTTT 139617 || || || || || || ||||| |||| | || ||| | ||| || | || | | Sbjct 3206 ATGATTGCCGGAATTAAAGAGATACTCGTAATCACTACCCCAAATGATCAGCATTTATAT 3265 Query 139618 CGAGAACTTACTAGGTAACGGTTCACAATTTGGTGTTAGAATAGAATACGCTGTTCAAGA 139677 | | |||||| ||||||| || || || | | ||||||||| || |||| || Sbjct 3266 -AAAAGATTACTAAAAGACGGTTCTCATTTAGGGATCAAAATAGAATATGCAATTCAGGA 3324 Query 139678 AAAACCTAATGGTTTAGCACAAGCTTTCGTTATCGGTGAAGAATTCATAGGTAAA 139732 | |||| || ||| | || || || || | ||||| || ||||| ||||| ||| Sbjct 3325 AGAACCCAAAGGTCTGGCGCAGGCATTTCTCATCGGAGAGGAATTTATAGGAAAA 3379 >seq8 Length=83026 Score = 104 bits (114), Expect = 3e-17 Identities = 389/601 (65%), Gaps = 22/601 (4%) Strand=Plus/Plus Query 139439 AAAGGAATTATTTTAGCAGGTGGGTCTGGGACCCGCTTGCATCCATTGACTATCAGTGTT 139498 ||||| || | |||| ||||| || ||||| || | | || | |||| | | Sbjct 48724 AAAGGCATAGTACTAGCTGGTGGTTCAGGGACACGTCTCTACCCTATCACTAAAGGCATA 48783 Query 139499 TCGAAACAGTTATTACCTGTATACGATAAACCAATGATTTACTATCCATTGACAACTCTT 139558 |||||||||||| | ||| | || || ||||||||||| ||||| || | | || Sbjct 48784 TCGAAACAGTTAATGCCTATTTATGACAAACCAATGATATACTACCCCATCAGTGTGCTG 48843 Query 139559 ATCGAAGCTGGTATAAACGAAATACTTATAATATCAACACCACAGGATA-GAAATTCTTT 139617 || || || ||| || |||||||| ||||| ||||| ||| | | ||| Sbjct 48844 ATGTTGGCAGGGATACGAGATATACTTATTATATCCACACCGTTTGATTTGCCAGGTTTT 48903 Query 139618 CGAGAAC--TTACTAGGTAACGGTTCACAATTTGGTGTTAGAATAGAATACGCTGTTCAA 139675 ||| ||||| ||| | || || | | |||||| | |||||||| | || Sbjct 48904 A---AACGTTTACTCGGTGATGGAGCAGATTATGGTGTACACTTCGAATACGCCGAGCAG 48960 Query 139676 GAAAAACCTAATGGTTTAGCACAAGCTTTCGTTATCGGTGAAGAATTCATAGGTAAATCT 139735 | |||| ||||| | ||||| |||||| || || | || ||||| ||||| | Sbjct 48961 CCATCACCTGATGGTCTTGCACAGGCTTTCACCATAGGCAAGGACTTCATCGGTAACGAT 49020 Query 139736 AAAGTAGCTCTGATTTTAGGTGACAACATTTTCCATGCTTCTAATATAGAT-AGATTACT 139794 ||| |||| || | || || ||||| || || | | | || | | | | || Sbjct 49021 TCCGTATGTCTGGTTCTGGGCGATAACATCTTTCAGGGAAC-AGGATTCACCAAAATGCT 49079 Query 139795 TATGGAAGCTAA---TATGTCTGAT------AAAAATACGA---TATTTGCATATCGTGT 139842 || ||||||| || | | || ||||| | | |||||| ||| | || Sbjct 49080 TAAGGAAGCTGTACGTACGGCAGAGGAAGCCAAAAAGGCAACTGTATTTGGATACTGGGT 49139 Query 139843 AAATGATCCTCAGAGATATGGTGTAGTTGAATTCGATGAATATGATAAC-GCTGTTTCGA 139901 |||||| ||| | | |||||||| | ||| || ||| || | | ||| ||| | || | Sbjct 49140 AAATGACCCTGAACGTTATGGTGTTGCTGAGTTTGATAAAGAAGGCAACTGCT-TATCAA 49198 Query 139902 TCGAAGAAAAACCTTTGAATCCTAAATCTAATTACGCAGTACCAGGCTTATATTTCTATA 139961 | ||||||||||| |||||| ||||||||||| ||||| || || || |||||| Sbjct 49199 TAGAAGAAAAACCAGAGAATCCAAAATCTAATTATGCAGTTGTTGGTTTGTACTTCTATC 49258 Query 139962 ATAACGATGTTATCGAAGTAGCTAAGACTATCAAACCTTCAGCTCGTGGAGAATACGAAA 140021 |||| | || | || | ||| | | || || ||||| || || || ||||| || | Sbjct 49259 CTAACAAGGTCGTTGACATTGCTCATAAAATAAAGCCTTCGGCACGAGGCGAATATGAGA 49318 Query 140022 T 140022 | Sbjct 49319 T 49319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701817665045280