Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_019529.1 Length=111506 Score E Sequences producing significant alignments: (Bits) Value seq2964 203 2e-47 seq2439 82.4 5e-11 >seq2964 Length=2227 Score = 203 bits (224), Expect = 2e-47 Identities = 284/395 (72%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 28562 GGAGTAACTGACAAAGGTTACTTAACAAACTCATTCCACTTAGACGTACTGAAGAAGGTA 28621 || || || |||||||| |||| || ||| |||||||| || || | ||| |||| Sbjct 502 GGTGTTACCGACAAAGGCTACTATACCAACAGTTTCCACTTGGATGTTCAGAAACAGGTC 443 Query 28622 AACCCGTATGATAAAATCGACTTTGAAGCGCAAT-TCATCCCATA-CAGCTCCGGTGGTC 28679 |||| |||| || |||||||| ||| | | | || | | || || ||| ||| Sbjct 442 GACCCTTATGCGAAGATCGACTTCGAAATGAACTATCCTGCAATGTCAAG--CGGCGGTT 385 Query 28680 ATATCTGCTACGGGGAATTCCCTAATATGCGCCACAATATTGAAGCACTCGAAAATGTGT 28739 |||||||||||| |||| ||||| |||| |||||| | || || ||||| |||||| Sbjct 384 TTATCTGCTACGGCGAATATCCTAACATGCAGCACAATGTCGAGGCGCTCGAGGATGTGT 325 Query 28740 GGGATTACGCCTACACCAAAGTCCCATACTACGGCACCAACACACCAATTGATGAATGCT 28799 |||||||| ||| ||| || || |||||||| ||||| || || ||||| ||||||| Sbjct 324 GGGATTACAGCTATGACAAGGTTCCGTACTACGGTACCAATACCCCGATTGACGAATGCT 265 Query 28800 ATAGCTGCGGATTCAAAGGTGAGTTCAATTGTACAAGCAAAGGTTTTGAGTGTCCTAACT 28859 | ||||| || | ||| || || || | ||||| |||||||| | |||||||||| Sbjct 264 ACAGCTGTGGTTACAAGGGCGAATTTGAGTGTACCTCTAAAGGTTTCGTATGTCCTAACT 205 Query 28860 GCGGAAACCACGACCCAGAGAAATGCTCTGTCACCAGACGAGTGTGTGGCTACCTAGGTA 28919 ||||| ||| ||| | ||||| || || | |||||| ||||| || || || || | Sbjct 204 GCGGATGCCATGACTCCGAGAAGGTTTCCGTAATCAGACGTGTGTGCGGTTATCTGGGAA 145 Query 28920 ATCCTGGTACTCGTCCATTCAATGCAGGTAAACAG 28954 ||| | | | ||||| ||||| || |||||| Sbjct 144 GTCCGGATGCCCGTCCTTTCAACAAGGGAAAACAG 110 Score = 123 bits (136), Expect = 2e-23 Identities = 281/422 (67%), Gaps = 3/422 (1%) Strand=Plus/Minus Query 27677 CAGACTCTAGAATACCAAGTAAATACTATTTACTCAACTAATGGTCAGACTCCGTTCTTG 27736 ||| |||| ||||| ||||||| || | | | | || ||||||||||||||| | Sbjct 1384 CAGTCTCTTGAATATGAAGTAAACACCCTGCATACCTCCAACGGTCAGACTCCGTTCGTA 1325 Query 27737 ACATTTGGATTCGGTCTAGGTACTTCTTGGGAAGCTAAACTAGTTCAGAAAGGTATTCTA 27796 || | || |||||||| || || || ||||| | || | ||||| |||||| Sbjct 1324 ACTCTCGGTTTCGGTCTGGGAACATCCTGGGAGTCACGTCTGATCCAGAAGTCTATTCTG 1265 Query 27797 CAGAATCGTATTGCTGGTCTAGGTAAAGAAGGTACTACTCCGGTATTCCCTAAGCTAGTA 27856 |||| | ||||||||||| || | | ||| |||| ||||||||||| || Sbjct 1264 AAGAACAGAATTGCTGGTCTCGGCCGCAATCACAGAACTGCGGTTTTCCCTAAGCTGGTG 1205 Query 27857 TTTGGTCTCAAAGATGGGGTAAACCTGAAGCCAGAAGACCCTAACTACGATATTAAGCAG 27916 |||| |||| || || | |||| || | || |||||||||||||| ||| || Sbjct 1204 TTTGCCATCAAGGAGGGACTGAACCGTAAAGAGGGTGATCCTAACTACGATATCAAGAAG 1145 Query 27917 CTTGCATTAGAATGTGCTACTGTTCGCATGTATCCAGACATACTTAACTACGATAAGACT 27976 || || | ||||| || | | |||||||| || || || ||||||||| || | Sbjct 1144 CTGGCTCTTGAATGCGCCTCCAAGAGAATGTATCCGGATATTCTGAACTACGATCAGGTT 1085 Query 27977 GTTGAAATTACAGGCGGATATAAAGCACCTATGGGCTGTCGCTCATTCTTGTCTACTTGG 28036 || | |||| || || || | || |||||||| ||||||||| | | | | Sbjct 1084 GTGAAGGTTACCGGTTCATTCAAGACTCCGATGGGCTGCCGCTCATTCCTCGCCCC---G 1028 Query 28037 TATGATGAAGACGGTAAAGAAACATATGCAGGTCGTAATAACCTTGGTGTGGTTTCTCTG 28096 ||||| || ||||| | | | | || ||||| || || |||||||| |||| Sbjct 1027 TATGAGGAGAACGGTGTTCAGATCCACGACGGCCGTAACAATCTGGGTGTGGTAAGTCTG 968 Query 28097 AA 28098 || Sbjct 967 AA 966 >seq2439 Length=54089 Score = 82.4 bits (90), Expect = 5e-11 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 38051 AACATTGCGCGTGTAGCTCAGTTGGTTAGAGCATCTGACTTTTAATCAGGTGGTCGGTGG 38110 |||||| | | | ||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 49452 AACATTCCTCCT-TAGCTCAGTTGGTTAGAGCATCTGACTGTTAATCAGAGGGTCGTTGG 49394 Query 38111 TTCGAGTCCA 38120 ||| |||||| Sbjct 49393 TTCAAGTCCA 49384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356672233560913