Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq2665 96.9 3e-15 seq3875 89.7 5e-13 seq2721 89.7 5e-13 seq3082 84.2 2e-11 >seq2665 Length=7310 Score = 96.9 bits (106), Expect = 3e-15 Identities = 457/714 (64%), Gaps = 23/714 (3%) Strand=Plus/Minus Query 38702 GCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTCCGAGAACT 38761 ||||||| |||||| | | |||||| || || ||||| | | ||||| | || Sbjct 3780 GCTTCCAGGAGACTGTCATATGTTCCGGTATCCAGCCATGCTATTCCTCTGCTGAATTTC 3721 Query 38762 TCCACTTGTAACTT-CCTGTCTTCTAGGTAGCTGCGATTGATA---TCAGTGATCTCCAG 38817 || |||| | || |||| ||| ||| || ||||| || || || || || || Sbjct 3720 TCAACTTCGAGTTTTCCTG-CTTTTAGATATA---GATTGTTAATGTCGGTAATTTCAAG 3665 Query 38818 TTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTATCATAGAA 38877 ||||| || ||||| || | || | |||| || || || ||| || ||||| Sbjct 3664 CTCTCCTCGTTTTGAAGGAGTGATTTGTTTTGCATATTCAACTACCTTGTTGTCGTAGAA 3605 Query 38878 ATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCAATAGAAAT 38937 ||||| ||| || || ||||| | |||||| |||| |||||| || |||||||| || | Sbjct 3604 ATACAGACCGGTCACTGCATATTTTGATTTTGGATGTTCAGGCTTTTCTTCAATTGATAC 3545 Query 38938 AGC-TTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATCTTTCACCAAAT 38996 | | ||| | | | | |||||||| | ||| | ||||||||||| | ||| || Sbjct 3544 AACCTTGTTGTCTT-TGTCGAATTCAACTATGCCGTAACGTTCAGGATCGTGCACTTTAT 3486 Query 38997 ACCCGAAAATACAAGCTCCGCCCCAAACAT-CTACCATCTCACTGGCGTTAATCAGTAGT 39055 ||||||| | | ||| || | | | | ||||| || |||| |||| Sbjct 3485 ACCCGAATACAATAGCACCTTCTTTTAGTTGAGAGCATCT-----GC-TTAA----TAGT 3436 Query 39056 TTACCAAAGCTTTGTCCGAAGAATAGGTTGTCACCTAAAATAAGAGCAACAGAGTCTTCT 39115 | || | || ||| ||| || || || | ||| || ||| || |||| | Sbjct 3435 GAAGTAAGTCCGTGACCGTGATATACATTATCTCCGAGAATTAGGCAAACTGAATCTTTT 3376 Query 39116 CCGATAAAATCTTTACCTATGATGAAAGCTTCCGCAAGACCTCGTGGCTCGGATTGGATT 39175 || ||||| || | || |||| || || | ||| |||||| || || || ||| Sbjct 3375 CCTATAAATTCCTCTCCGATGAGAAATGCCTGCGCCAGACCTTTGGGTTCTTCCTGAATT 3316 Query 39176 GCGTAAGTGAGTTTTATCCCAAACATAGACCCATCTCCGAGAAGATACTCAAAGTCTTCC 39235 || || | ||| ||||| || ||| || ||| || | | | | | | Sbjct 3315 GCATATTCTATTTTGATCCCTAAATGAGAACCGTCTTTTAGTAATCTTTTATATAAATGC 3256 Query 39236 TGATCACCTGGTGTGGTGATGATTAAAATATCCTTAATGTCAGCCAACATCAATACCGAT 39295 |||||| ||| || ||||| | | || || ||||| | || | ||||| | Sbjct 3255 TGATCATTTGGGGTAGTGATTACGAGTATCTCTTTAATTCCGGCAATCATCAGAGTTGCC 3196 Query 39296 AAAGGGTAGTAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTGCTCACACTGCG- 39354 | || || ||||||||||||||||| || | || |||||||| || | || | || Sbjct 3195 AGCGGATAATAGATCATGGGTTTGTCGTATATGGGCAGCAATTGTTTATTGAC-CGCCGT 3137 Query 39355 TGTTACCGGATGAAGGCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTTCAT 39408 ||||| ||||| || | || || || || || | |||||| |||||||| Sbjct 3136 TGTTAACGGATATAGTCTCGTGCCTGAACCACCTGCTAGAATAATTCCTTTCAT 3083 >seq3875 Length=62153 Score = 89.7 bits (98), Expect = 5e-13 Identities = 123/167 (74%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 38806 AGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTACT-TCTAATGCACGTTGAATAACAG 38864 ||| ||||||| ||| ||||| || ||||| | | | ||| ||| || | ||||| Sbjct 2077 AGTAATCTCCAATTCGCCACGAGCTGAAGGCTTGATTGTCTT-TGCGATTTCTACAACAG 2019 Query 38865 AGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCT 38924 | |||||||||||||||| ||| | |||||||||| || ||||| || || |||| Sbjct 2018 AATTATCATAGAAATACAGACCCGGAACAGCATAATTACTCTTTGGATTCTCTGGCTTCT 1959 Query 38925 CTTCAATAGAAATAGCTTGACGATTACTC-CCAAATTCAACCACACC 38970 | || ||||||||||| || ||| ||| ||||||| || || || Sbjct 1958 CCTCGATAGAAATAGCCACACCATT-CTCGTCAAATTCTACTACGCC 1913 >seq2721 Length=5566 Score = 89.7 bits (98), Expect = 5e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 38870 TCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCA 38929 ||||| |||||||||||||| | |||||||| || ||||| ||||||||||| |||||| Sbjct 554 TCATAAAAATACAAACCTGTTATTGCATAATCAGACTTAGGTTTTTCAGGTTTTTCTTCA 495 Query 38930 ATAGA-AATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATCTTT 38988 ||||| || | ||| | || | |||| || || ||||| || | || ||||| | Sbjct 494 ATAGATAAAACCTTATTGTTTTC-ATCAAACTCTACAACACCAAACCTTTTCGGATCACT 436 Query 38989 CACCAAATACCCGAAAAT 39006 || |||||| ||||| Sbjct 435 AACGTTATACCCAAAAAT 418 >seq3082 Length=15497 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 39272 ATGTCAGCCAACATCAATACCGATAAAGGGTAGTAGATCATGGGTTTGTCATACACAGGG 39331 ||| | |||| ||||| || || | || || |||| ||| ||||||||| | | ||| Sbjct 14644 ATGCCTGCCAGCATCAGCACTGACACCGGATAATAGACCATCGGTTTGTCAAAAATAGGA 14703 Query 39332 AGCAATTGCTTGCTCACAC--TGCGTGTTACCGGATGAAGGCGGGTTCCACTTCCTCCCG 39389 | | ||||||||||||| | ||| || |||| ||| || ||||| ||||| |||| Sbjct 14704 ATAAGCTGCTTGCTCACACCTTTCGTAATA--GGATAAAGACGAGTTCCGCTTCCACCCG 14761 Query 39390 CCAAAATAATACCTTTCAT 39408 |||| | ||| |||||||| Sbjct 14762 CCAATACAATTCCTTTCAT 14780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472600275719880