Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq2964 122 1e-22 seq2701 98.7 1e-15 seq2619 95.1 1e-14 seq1618 95.1 1e-14 >seq2964 Length=2227 Score = 122 bits (134), Expect = 1e-22 Identities = 633/988 (64%), Gaps = 64/988 (6%) Strand=Plus/Minus Query 152358 GGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCTGATATCGAACCGCCTAAATCAATC 152417 || ||| | ||| ||| ||| |||||||| || || |||||| | ||||| |||||| Sbjct 1654 GGAATGCTGGAACGCGGTTTCAAGATGGGTAATGCCGAAATCGAATCACCTAAGTCAATC 1595 Query 152418 GGTGTTGCTACTGCTCTTATGGCTCAGATCACCGCACAGATTGCTTCTCACCAGTACGGC 152477 || || || || ||| || ||||||| ||| ||| |||| || |||||| Sbjct 1594 AGTACCGCAACCGCGGTTACCGCACAGATCATCGCCCAGGTTGCCAGCCATATCTACGGC 1535 Query 152478 GGGACAACCTTTGCAAA---TGTCGATCAGGTGCTGGCCCCTTACGTTGAAATGACGTAC 152534 || |||||| | ||| ||| ||| ||||||| ||||| || ||| | || | | Sbjct 1534 GGTACAACCAT--CAACCGCTGT-GATGAGGTGCTTGCCCCGTATGTTACCAAGAGTTTC 1478 Query 152535 AACAAACACTTTAAAGATGCT----GTTTGGTACGGGGTTCCTAAATCAAAACAG-TATG 152589 | || | | |||||| | ||| || ||||| | || |||| | || Sbjct 1477 ATGAAGTA-TCAGAAGATGGCCGAGGAGTGGCACA---TTCCTGA-TCCGGACAGCTTTG 1423 Query 152590 CGATGGAAAAAACAGAAAAGGA-TG-TATTCGATGCGTTCCAGTCATACGAATATGAAGT 152647 | | || |||||||| || ||| || || |||||||| ||||||||||| Sbjct 1422 CCCGAGCCCGTACTGAAAAGGAGTGCTAT--GACGCCTTCCAGTCTCTTGAATATGAAGT 1365 Query 152648 AAACACCTTACATACTGCAAATGGACAGACGCCTTTTGTCACAATCACTTTCGGTATGGG 152707 ||||||| | ||||| | || || ||||| || || || || || ||||||| |||| Sbjct 1364 AAACACCCTGCATACCTCCAACGGTCAGACTCCGTTCGTAACTCTCGGTTTCGGTCTGGG 1305 Query 152708 TACTGGTTGGCGCGAACGCATGATCCAGAAAGCGATTCTGAAAAACCGTATTCGTGGACT 152767 || ||| ||| |||||||||| | |||||||| ||| | ||| ||| || Sbjct 1304 AACATCCTGGGAGTCACGTCTGATCCAGAAGTCTATTCTGAAGAACAGAATTGCTGGTCT 1245 Query 152768 GGGTAAAAAAGGCATTACCCCTGTATTCCCAAAACTGGTTATGTTT---ATGGAAAAAGG 152824 || || || || | || ||||| || |||| ||||| || || ||| Sbjct 1244 CGGCCGCAATCACAGAACTGCGGTTTTCCCTAAGCTGG---TGTTTGCCAT-CAAGGAGG 1189 Query 152825 GA-TTAACCTTAATCCGGAAGACAGAAACTATGATATTAAGAAATTGGCCCTGGAATGTG 152883 || | |||| ||| || || ||||| ||||| ||||| |||| || ||||| | Sbjct 1188 GACTGAACCGTAAAGAGGGTGATCCTAACTACGATATCAAGAAGCTGGCTCTTGAATGCG 1129 Query 152884 CTTCAAAGCGTATGTATCCGGATATTATTAGCGCGGCTAATAACCGTCGT----ATTACT 152939 | || ||| | ||||||||||||||| | | | | | | || || |||| Sbjct 1128 CCTCCAAGAGAATGTATCCGGATATTCTGAACTACGATCA----GGTTGTGAAGGTTACC 1073 Query 152940 GGCTCTAGCATTCCTGTATCTCCTATGGGTTGTCGTAGTTTCCTTAGCGTGTGGAATGAT 152999 || | ||||| | |||| ||||| || || ||||| || | |||| Sbjct 1072 GGTT----CATTCAAG--ACTCCGATGGGCTGCCGCTCATTCCT---CGCCCCGTATGAG 1022 Query 153000 GAGCACGGTAATGAAATTCTTGATGGACGTAATAACCTGGGCGTTGTGACAATCAACCTT 153059 ||| ||||| | | || | || || ||||| || ||||| || || | | || || Sbjct 1021 GAGAACGGTGTTCAGATCCACGACGGCCGTAACAATCTGGGTGTGGTAAGTCTGAATCTG 962 Query 153060 CCTCGTATTGCGATTGAAGCCGAAGCACAGGAAGATGAAGACGCGCATGATGCATTTTGG 153119 |||||||| || ||||| ||| ||| |||| |||| || ||| | Sbjct 961 CCTCGTATCGCCATTGAGGCC------AAGGGGGATG-AGAC---CA-----AATTCTAC 917 Query 153120 CGTATCCTTGATGAACGTCTGGAACTGTGCTTTGAAGCCCTGATGACTCGTATTGATAGT 153179 ||||| | |||||||||| | | ||| | || ||| || ||||||| || Sbjct 916 AAGATCCTCGGTGAACGTCTGAACATCTGCAAGAAGGCGCTGCTGTGCCGTATTGCCCGT 857 Query 153180 CTCAGAGGTGTTAAAGCCAGTGTAGCCCCGATCCTTTATACAGAAGGTGCGTTTGGTGTA 153239 || ||||| || || |||| ||||||||||| || | || ||||| | ||||| Sbjct 856 CTGGACGGTGTGAAGGCACGTGTGGCCCCGATCCTCTACATGGAGGGTGCCTGCGGTGTC 797 Query 153240 CGGTTGAAACCCGATGATGAAATTCTGGAACTGTTCAAAAATGGGCGTAGTTC--TATCA 153297 || | || | || || || || | | ||||| || |||||| || |||| Sbjct 796 CGCCTTAAGGCTGACGAGGATATATCCAAGATTTTCAAGAACGGGCGTGCGTCCGTATC- 738 Query 153298 GTCTGGGATACATCGGATTGCATGAAAC 153325 |||||| || ||||| | ||||| || Sbjct 737 -TCTGGGTTATATCGGTATTCATGAGAC 711 >seq2701 Length=6067 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 50851 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 50910 || ||||| || |||||| | || || ||||| | | | ||||| || || ||||| Sbjct 5181 GTAGAAGGCGGTCAGCATCTGAATGTGAACGTTCTCAACAGAGAAACACTGCTCGATGCA 5240 Query 50911 GTTGAACATCCTGAAAAATA-CCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCG 50969 | ||||| ||||||||||| || ||| | || ||||||||||| |||||||| || || Sbjct 5241 ATGGAACACCCTGAAAAATATCCTACA-CTGACAATCCGTGTTTCAGGTTATGCTGTACG 5299 Query 50970 TTTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACCTTTACAGAGAG 51029 ||| ||||| | ||| |||||||| | || ||| | | ||||| || || ||| Sbjct 5300 TTTCAACTCTTTAACCAAAGAACAGCAGCAGGATGTTGTAACAAGAACTTTCACTCAGAA 5359 Query 51030 TCTATAAT 51037 || |||| Sbjct 5360 GCTGTAAT 5367 >seq2619 Length=11042 Score = 95.1 bits (104), Expect = 1e-14 Identities = 217/323 (67%), Gaps = 8/323 (2%) Strand=Plus/Minus Query 39375 GGATCATCGTTTCGGCATGGAACCCTGTTGATCTTGATGATATGGCATTGCGTCCGTGTC 39434 ||||||||||||| || ||||| | | || ||||| | |||||||| ||| |||| Sbjct 2563 GGATCATCGTTTCAGCCTGGAATGCCGGAGAAATTGATAAGATGGCATTAGCTCCTTGTC 2504 Query 39435 ACTGTTTCTTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTT 39494 | | | || ||||| |||| | || ||| | ||| |||| ||||||||| Sbjct 2503 ATGCTCTTTTCCAGTTTTATGTAGTTAATAACAAATTATCTTGCCAGTTGTATCAGCGAA 2444 Query 39495 CAGTTGATGTC-TTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGACGCAT 39553 ||||||| ||||| | ||| || |||||||| || |||||||| || || ||| Sbjct 2443 GCTGTGATGTCTTTCTTGGTGTT-CCTTTCAATATTGCTAGTTATGCTCTTCTTACTCAT 2385 Query 39554 ATTATCGCTGATATTTGCGGGTACGAAGTGGGCGATCTGGTTTGGACTGGTGGTGATGTC 39613 || || || | |||| || || || ||| | |||||||| || || ||||| Sbjct 2384 ATGATGGCGCAGCAGTGCGATCTTGATGTTGGTGATTTTGTTTGGACCGGCGGAGATGTT 2325 Query 39614 CATATCTATAAAAATGCGGTTGAACAGGCAAAAGAACTTTTACAGCCTAACCGTTCACCA 39673 || | ||| |||| | |||||||||| ||||| |||| | | ||||| Sbjct 2324 CACTTATATTCAAATCACCTGGAACAGGCAA---AACTT---CAGCTTTCAAGAACACCA 2271 Query 39674 ATGCCATTACCGATTCTAAAAAT 39696 | | ||| ||| || ||||||| Sbjct 2270 AGGGAATTGCCGGTTTTAAAAAT 2248 >seq1618 Length=17866 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 39381 TCGTTTCGGCATGGAACCCTGTTGATCTTGATGATATGGCATTGCGTCCGTGTCACTGTT 39440 |||| | ||||||||||||| ||| | || ||||||||||||| ||| ||||| || Sbjct 9388 TCGTCACAGCATGGAACCCTGCTGAGATAGAAGATATGGCATTGCCTCCCTGTCATTGCC 9329 Query 39441 TCTTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTG 39500 ||||||||||| ||| | | | |||| || || ||| || || ||||| | || Sbjct 9328 TCTTTCAGTTCAATGTGAGCGAAGGTAGTCTTTCCTGTCAGCTATACCAACGTTCGGCTG 9269 Query 39501 ATGTCTTCTTAGGGTTGCCGTTCAATATCGCC 39532 || | || || || ||||||||||||| ||| Sbjct 9268 ATATTTTTTTGGGAGTGCCGTTCAATATAGCC 9237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557958034882920