Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4549 150 1e-30 seq145 149 4e-30 seq2640 123 2e-22 seq320 120 2e-21 seq1740 116 2e-20 seq3881 114 8e-20 seq112 109 4e-18 seq1601 89.7 3e-12 seq1931 87.8 1e-11 >seq4549 Length=53065 Score = 150 bits (166), Expect = 1e-30 Identities = 212/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 475875 TTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGA 475934 || ||||| | ||||| || ||||||||| | ||| ||||||| | || || || | Sbjct 45380 TTTTACTTTTGGACGTTACACCACTTTCACTCGGTATTGAAACTTTGGGCGGCGTTTGCA 45439 Query 475935 CTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTT 475994 | || ||||||| | ||||| | || || |||||||| |||| ||||| ||| Sbjct 45440 CAAAAATTATTGAACGCAATACAACCATTCCTACTCAAAAATCACAAGTCTTTTCAACTG 45499 Query 475995 ATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTA 476054 |||| |||||| ||| || || || | || | ||||||||| || | | Sbjct 45500 CGGCTGACAATCAATCAAGCGTTGAAATTCACGTTTTGCAGGGTGAAAGAGAAATGGCAG 45559 Query 476055 AAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAG 476114 | |||||| | || ||| |||| ||| || |||||| ||||| || | |||| Sbjct 45560 CCGGTAATAAAACTCTCGGACGTTTTGTACTTTCAGATATTCCGCCTGCGCCGCGTGGAG 45619 Query 476115 TTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 |||| ||||||||||||||||| ||||||||||| || |||||| |||||||| |||| Sbjct 45620 TTCCGCAAATTGAAGTTACTTTCGATATTGATGCTAACGGTATTGTTAATGTTTCTGC 45677 Score = 120 bits (132), Expect = 2e-21 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 |||||| | || || || |||||||| || || |||||||| ||||||||||||||| Sbjct 44632 GTAACTCAAGCGGTTATCACTGTTCCGGCTTACTTTAATGACAGTCAACGTCAAGCAACA 44691 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 ||||| ||||| | ||||||||| ||| | ||||| | ||||| || ||||| || || Sbjct 44692 AAAGACGCGGGCAAAATTGCAGGGCTTGAAGTTTTGAGAATTATCAACGAACCGACGGCG 44751 Query 474848 GCCGCACTTGCTTATGGTCTTGATAA 474873 || || |||||||| || | ||||| Sbjct 44752 GCTGCGCTTGCTTACGGCTTAGATAA 44777 >seq145 Length=97958 Score = 149 bits (164), Expect = 4e-30 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 474648 AACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAA---CCG 474704 || ||||| | ||| ||||||||| |||| ||||| ||||| ||| || ||| Sbjct 34395 AAAAATTTGCTCCGTCACAAATTTCAGCAATTGTTTTGCAAAAAATTAAAGAATATGCCG 34336 Query 474705 CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTA 474764 || | | || || || || | | | || |||||||| ||||| |||||||| | Sbjct 34335 AAAGTT---ACCTGGGCGAAAAAATCGATAAAGCCGTAATTACGGTTCCGGCATATTTCA 34279 Query 474765 ATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTAC 474824 ||||||| |||||||| ||||| |||||||| |||| |||||| ||| | | ||||| | Sbjct 34278 ATGATTCACAACGTCAGGCAACAAAAGATGCCGGAAAAATTGCGGGTTTGGAAGTTTTGC 34219 Query 474825 GTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||| || || || || ||||| |||||||||||||||||| | ||||| || Sbjct 34218 GTATCATAAACGAGCCGACAGCTGCCGCACTTGCTTATGGTATGGATAAAAA 34167 >seq2640 Length=8223 Score = 123 bits (136), Expect = 2e-22 Identities = 203/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 475886 GACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATT 475945 || |||||||| |||||||||||| ||||||| || || || ||| | | || ||| Sbjct 6166 GATGTAACTCCGCTTTCATTAGGTATTGAAACCCAGGGCGGTATCATGTCAACCCTGATT 6107 Query 475946 GACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAAT 476005 || | ||||| |||| || ||| || ||| | || | || || | || || Sbjct 6106 GAAAAGAATACAACTATTCCTACCAAGAAGTCACAGGTTTACTCAACAGCTGAAGACAAC 6047 Query 476006 CAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAG-AT-AATA 476063 || | ||||||| || || | | | |||||||||||| || ||| || || | Sbjct 6046 CAGCCTGCTGTAACAATTCACGTACTGCAGGGTGAAAGAAAA--CAGGCAAGCATGAACA 5989 Query 476064 ACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAA 476123 | || ||| || || |||||||||||| |||||||||| | ||||||||||| | Sbjct 5988 AGTCTCTCGGACAGTTCAACCTTGAAGGTATTGCTCCTGCTCCACGCGGAGTTCCTCAGA 5929 Query 476124 TTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 |||||||||| |||||||| ||||| | |||||| | |||| |||| Sbjct 5928 TTGAAGTTACCTTTGATATCGATGCCGACGGTATTATCCATGTATCTGC 5880 >seq320 Length=5459 Score = 120 bits (132), Expect = 2e-21 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 474713 TATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCT 474772 |||||||| |||||| | | || || || || || || ||||| || ||||| || | Sbjct 3391 TATCTTGGTCAAGAAATCAGCGAAGCCGTCATCACCGTACCAGCCTACTTTAACGACGCA 3450 Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 || ||||| ||||| ||||| || || ||||||||||||||| || |||||| | Sbjct 3451 CAGCGTCAGGCAACAAAAGAAGCTGGCGAAATTGCAGGTCTTAAAGTCCGTCGTATTGTC 3510 Query 474833 AATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || ||||| ||||| ||||| || ||||||||||| ||||| Sbjct 3511 AACGAGCCAACGGCAGCAGCACTCGCCTATGGTCTTGACAAGAA 3554 >seq1740 Length=34420 Score = 116 bits (128), Expect = 2e-20 Identities = 210/304 (69%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 475872 ATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTA 475931 |||| | ||| |||| || || ||||||||| | | |||| ||| | || || ||| Sbjct 5160 ATATCCTTCTTCTTGATGTTACACCACTTTCACTTTCTATTGAGACAATGGGTGGTATTG 5101 Query 475932 TGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAA---TCAAAAGTATTTT 475988 || | ||||| || |||||||| |||| || | |||| || ||| | |||| | Sbjct 5100 CTACAAGACTTATCGAGAGAAATACAACTATTCC-TACAAAGAAGAGTCAGA--TATTCT 5044 Query 475989 CCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAAT 476048 | || ||||||| || ||| | || ||| | || | | ||||| ||| | | Sbjct 5043 CTACAGCAGCTGATAACCAGACAGCAGTTGACATTAACGTCGTACAGGGTGAGAGACAGT 4984 Query 476049 TCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCA 476108 | | || ||||| || ||||||| || | ||||| ||||| || || || | Sbjct 4983 TTGCCAAGGATAACAAATCACTTGGACAGTTCAGACTTGATGGTATCCCACCAGCAATGA 4924 Query 476109 GAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTA 476168 |||| || || || ||||| ||||| |||||||||||||||||||||||| | ||||| Sbjct 4923 GAGGTGTACCACAGATTGAGGTTACATTTGATATTGATGCAAATGGTATTGTAAATGTAT 4864 Query 476169 CTGC 476172 |||| Sbjct 4863 CTGC 4860 Score = 102 bits (112), Expect = 5e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 474723 AAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAG 474782 || |||| || || || || || ||||| || || || || |||||| | || ||||| | Sbjct 5916 AAAAAGTTACAGAGGCTGTTATCACTGTACCTGCTTACTTCAATGATGCACAGCGTCAGG 5857 Query 474783 CAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAA 474842 | || |||||||| || | || ||||| ||| |||| ||||| || || || || | Sbjct 5856 CTACAAAAGATGCCGGCAAGATCGCAGGACTTGATGTAAAGCGTATCATCAACGAGCCTA 5797 Query 474843 CAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 ||||||| || ||||| ||||||||||| || Sbjct 5796 CAGCAGCAGCTCTTGCATATGGTCTTGACAA 5766 >seq3881 Length=49372 Score = 114 bits (126), Expect = 8e-20 Identities = 206/298 (69%), Gaps = 6/298 (2%) Strand=Plus/Minus Query 475872 ATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTA 475931 ||||| | ||| |||| || || ||||||||| | | |||| ||| | || || || Sbjct 5872 ATATTCTCCTTCTTGATGTTACACCACTTTCACTTTCTATTGAGACAATGGGTGGTATCG 5813 Query 475932 TGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAA---TCAAAAGTATTTT 475988 || | |||||||| |||||||| |||| || | |||| || ||| | | || | Sbjct 5812 CTACAAGACTTATTGAGAGAAATACAACTATTCC-TACAAAGAAGAGTCAGA--TCTTCT 5756 Query 475989 CCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAAT 476048 | || |||| ||||| ||| | || ||| | | | | ||||| ||| | | Sbjct 5755 CTACAGCAGCTGACAATCAGACAGCAGTTGATATCAATGTTGTACAGGGTGAGAGACAGT 5696 Query 476049 TCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCA 476108 | |||| ||||| || ||||||| || | ||||| ||||| || || || | Sbjct 5695 TTGCTAAGGATAACAAATCACTTGGACAGTTCAGACTTGATGGTATCCCACCAGCAATGA 5636 Query 476109 GAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGT 476166 |||| || || || ||||| ||||| |||||||||||||||||||||||| | ||||| Sbjct 5635 GAGGTGTACCACAGATTGAGGTTACATTTGATATTGATGCAAATGGTATTGTAAATGT 5578 Score = 114 bits (126), Expect = 8e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || || || ||||| ||||| || || || || ||||| ||| |||| ||||| || || Sbjct 6623 GTTACAGAAGCAGTTATTACGGTACCGGCTTACTTTAACGATGCTCAGCGTCAGGCTACA 6564 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 || ||||| || | ||| ||||||||| |||| ||||| || ||||| || ||||| Sbjct 6563 AAGGATGCAGGTAAAATCGCAGGTCTTGATGTAAAGCGTATCATCAATGAGCCTACAGCT 6504 Query 474848 GCCGCACTTGCTTATGGTCTTGATAA 474873 || || ||||| |||||||||||||| Sbjct 6503 GCAGCCCTTGCATATGGTCTTGATAA 6478 Score = 86.0 bits (94), Expect = 4e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 290823 CAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGAC 290882 |||||||||||| | | || ||||| || ||||| || || | ||||||||||| Sbjct 6482 CAAGACCATATGCAAGGGCTGCAGCTGTAGGCTCATTGATGATACGCTTTACATCAAGAC 6541 Query 290883 CTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGA 290942 |||| ||||| | | ||| || ||||| || || ||||| ||||| ||||| || | Sbjct 6542 CTGCGATTTTACCTGCATCCTTTGTAGCCTGACGCTGAGCATCGTTAAAGTAAGCCGGTA 6601 Query 290943 CTGTAATAACAGCTT 290957 | |||||||| |||| Sbjct 6602 CCGTAATAACTGCTT 6616 >seq112 Length=216842 Score = 109 bits (120), Expect = 4e-18 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 474666 AAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAA 474724 |||| ||| | ||||| | ||||||||| | ||||| ||| | || || ||||| Sbjct 7545 AAATCTCTGCTATGGTGCTCCAGAAAATGAAAAAGACCGCAGAGGAC-TACCTCGGACAG 7487 Query 474725 GAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCA 474784 ||||| || ||||| || || || || || ||||| || | || || ||||| || || Sbjct 7486 GAAGTGACCGATGCCGTCATCACCGTACCGGCATACTTCAGCGACTCGCAACGCCAGGCT 7427 Query 474785 ACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACA 474844 || || || || ||| |||||||||||| ||||| || || | || ||||| || Sbjct 7426 ACGAAGGAAGCCGGACAAATTGCAGGTCTGAATGTACAGCGCATCGTCAACGAACCTACC 7367 Query 474845 GCAGCCGCACTTGCTTATGGTCTTGATAA 474873 ||||||||||| ||||| ||| | || || Sbjct 7366 GCAGCCGCACTGGCTTACGGTGTCGACAA 7338 >seq1601 Length=30394 Score = 89.7 bits (98), Expect = 3e-12 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 474689 AAAATGAAACAAACCGC-GAGCTCATATCTTGGACAA-GAAGTAACTGATGCAGTAATTA 474746 || |||||| ||||||| ||| || || | | || ||||| || || || || || | Sbjct 11914 AAGATGAAAAAAACCGCTGAGG--ATTTCCTCGGCAGCGAAGTGACCGAAGCTGTCATCA 11971 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 | |||||||| || || ||||| ||| ||||| || || ||||| || || |||| Sbjct 11972 CGGTTCCAGCTTACTTCAATGACAGTCAGCGTCAGGCCACAAAAGAGGCTGGTGAGATTG 12031 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 | || || || || ||||| | || ||||| ||||| || || || || || |||| Sbjct 12032 CCGGACTCAAAGTGCGTCGTATCGTCAACGAACCTACAGCTGCAGCTCTCGCCTACGGTC 12091 Query 474867 TTGATAAGAA 474876 |||||||||| Sbjct 12092 TTGATAAGAA 12101 >seq1931 Length=77865 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 || || | ||| || ||||| ||||||||||||| || || | | |||||||| | || Sbjct 29164 CCGTCTCTTCCGGCCCTACCAGTTTCTTGATAATATCCCTCCAAACTTTTAGGTATGTCA 29223 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 || || || || |||||| || | ||||| ||| ||||| ||||||||||| || || Sbjct 29224 TAGTGAATAACAAATCTCACGTCAGGTTTATCAATTCCCATCCCAAATGCAATAGTCGCC 29283 Query 627889 ACCATTATATTTA-CTTTTCCAT 627910 || || | || | | ||||||| Sbjct 29284 ACGATCACATCAACCCTTTCCAT 29306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267960479149652