Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq4937 100 3e-16 seq152 91.5 2e-13 seq3314 87.8 2e-12 seq2458 86.0 7e-12 seq2216 84.2 2e-11 seq4050 82.4 8e-11 seq121 82.4 8e-11 >seq4937 Length=6770 Score = 100 bits (110), Expect = 3e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||| |||||||||||| ||||||||| ||| ||||||| ||| | |||||||||||||| Sbjct 156 CGGGATGTAGCGCAGCT-GGTAGCGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 98 Query 157750 TCCTGTCACCCCGACTT 157766 |||||||| |||||||| Sbjct 97 TCCTGTCATCCCGACTT 81 >seq152 Length=50040 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 18362 GTGGCGGAATCGGTAGACGCACCAGACTTAAAATCTGTTGGGCAATAGCCCGTGAGAGTT 18421 |||||||||||||||||||| |||||||||||||||||||| || |||||| ||||| Sbjct 8436 GTGGCGGAATCGGTAGACGCTGCAGACTTAAAATCTGTTGGGATTTATCCCGTGCGAGTT 8495 Query 18422 CAAGTCTC 18429 |||||||| Sbjct 8496 CAAGTCTC 8503 >seq3314 Length=12619 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 157689 ACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGA 157748 ||||||||||||||||| |||||||| || ||||||| || ||||||||||||| Sbjct 12497 ACGGGGTGTAGCGCAGCCCGGTAGCGCACCTGGTTTGGGACCAGGGTGTCGCAGGTTCGA 12556 Query 157749 ATCCTGTCACCCCGAC 157764 |||||||||||||||| Sbjct 12557 ATCCTGTCACCCCGAC 12572 >seq2458 Length=23789 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||||||| |||||| | | |||||| ||||||||||||| ||||||| |||||| Sbjct 1714 CGGGGTGTGGCGCAGTTGGCTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCAAGTTCGAG 1655 Query 157750 TCCTGTCACCCCGACTTATC 157769 || ||||||||||||||||| Sbjct 1654 TCTTGTCACCCCGACTTATC 1635 >seq2216 Length=5131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 156615 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCC 156670 ||||||||||||||||||||||||||||||||||||| || | |||||||||||| Sbjct 4445 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGCCGGAGGTTCGAGTCC 4500 >seq4050 Length=57342 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 156608 GGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAG 156667 || || |||||||||||||||||||||||||||||||||||||| || | | |||||||| Sbjct 43937 GGTTCCGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGCCTCGGGTTCGAG 43996 Query 156668 TCC 156670 || Sbjct 43997 CCC 43999 >seq121 Length=94419 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 ||||||||||||||| |||||||| || ||||||| || ||||||||||||||| Sbjct 445 CGGGGTGTAGCGCAGTCCGGTAGCGCTCCTGGTTTGGGACCAGGCGGTCGCAGGTTCGAA 386 Query 157750 TCCTGTCACCCCGAC 157764 ||||||| ||||||| Sbjct 385 TCCTGTCGCCCCGAC 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547712287962840