Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1956 107 2e-18 seq173 107 2e-18 seq1580 104 3e-17 seq3869 98.7 1e-15 seq4856 95.1 1e-14 seq3028 87.8 2e-12 seq1764 86.0 7e-12 >seq1956 Length=35610 Score = 107 bits (118), Expect = 2e-18 Identities = 249/372 (67%), Gaps = 15/372 (4%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| | ||||| |||| | || || ||| | |||||| | || Sbjct 3769 CCAGGAACTGGTAAGACTTTGCTCGCTAAAGCCGTTGCAGGCGAAGCTAATGTCTCGTTT 3710 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | |||| | | || ||||| |||||||| ||||| || || ||||||| Sbjct 3709 TTTTCTCTATCTGGTTCTGATTTCGTGGAAATGTTTGTAGGTGTTGGAGCATCAAGGGTT 3650 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | || ||||| || | || ||| || ||||| ||||| ||||||||||| Sbjct 3649 AGAGACCTCTTCCAA----CAAGCTAAACAGAAAGCTCCATGCATTGTTTTCATTGATGA 3594 Query 175491 GATTGATGC----GGT-GGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAG 175545 |||||||| ||| ||||||| | | | | | | | || | | | ||||||||| Sbjct 3593 AATTGATGCTATTGGTAGGGCAAGAAGTGGAAAG--GCTAGCATACAATCCAATGACGAG 3536 Query 175546 AGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGC 175605 || ||| ||| |||| || |||| ||||| |||||||| |||| | | || || Sbjct 3535 AGGGAAAGCACACTTAACCAGTTACTTACCGAAATGGATGGATTTGGAGCTAATACGGGT 3476 Query 175606 ATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCG 175665 | | || || ||||| ||||| | | |||||| |||||| | || || ||||| | Sbjct 3475 GTGATAGTCATGGCGGCTACTAACAGGGCGGATATTCTTGATAAGGCTCTTCTTCGAGCC 3416 Query 175666 GGTCGTTTTGAT 175677 || || || ||| Sbjct 3415 GGACGCTTCGAT 3404 >seq173 Length=30558 Score = 107 bits (118), Expect = 2e-18 Identities = 204/295 (69%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 175207 GACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATAT 175266 |||| || ||| | ||||| ||||||||||| || || || || ||||| | ||| Sbjct 3203 GACGGAGCAAAACAAGAACTCGAAGAGATTGTCGAATTCCTTCGCCACCCCGACAAGTAT 3144 Query 175267 TTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGA 175326 | | |||| |||||| || || || ||||| |||| || || || || || Sbjct 3143 ACCGAACTCGGTGGCAAGATTCCTCGTGGAGCCCTACTCGTAGGCCCTCCTGGCACAGGC 3084 Query 175327 AAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTC 175385 ||||| ||||| ||| |||| | || || ||| | ||||| |||||| || | || || Sbjct 3083 AAGACGCTCCTTGCCAAAGCCGTTGCTGGCGAAGCCAATGTACCATTCTTCTCCATG-TC 3025 Query 175386 TGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTT 175445 || | | |||| || ||||||||||| || || || || | | |||||||| ||||| Sbjct 3024 TGGCTCCGACTTCGTCGAGATGTTTGTAGGCGTCGGAGCAAGTCGTGTTCGCGACCTCTT 2965 Query 175446 TGAAATCGCC-CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 | | ||| | | ||| | || || || ||||||| || || |||||||| Sbjct 2964 CGCCAAAGCCAAGAGCAAAGC-CCCTTGCATAATCTTCATCGACGAAATTGATGC 2911 >seq1580 Length=60959 Score = 104 bits (114), Expect = 3e-17 Identities = 213/307 (69%), Gaps = 11/307 (4%) Strand=Plus/Minus Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 ||||||| ||||||||||| || || |||||| | | || ||||| || || ||| | Sbjct 60914 ACTTTGTCGAGATGTTTGTCGGAGTTGGTGCCTCACGTGTACGCGACCTTTTCGAAGAAG 60855 Query 175454 CCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAA 175512 || | |||||| || |||||| |||| || || || || || || ||||| | || Sbjct 60854 CCAAGAAAAAATCTCCC-TGTATTATCTTTATCGACGAAATCGACGCTGTGGG-ACGCGC 60797 Query 175513 C-GCAGCGCTGGTGGTATGC-CA--GCAAATGACGA--GAGAGAACAAACAATTAATCAA 175566 | ||||| ||| || || || || |||||||| | ||||||| || | || || Sbjct 60796 CCGCAGCCGTGGCGGACTGAGCAATGCCAATGACGAACGCGAGAACA--CATTAAACCAG 60739 Query 175567 CTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACT 175626 |||||||| ||||||||||| || | || | | ||| | | || || || ||||| Sbjct 60738 CTACTCACTGAGATGGATGGATTCGGCACCAACAACGGCGTCATCGTAATGGCCGCCACC 60679 Query 175627 AATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATC 175686 || || | || || ||||| ||||| |||||| | || || || || || |||| Sbjct 60678 AACCGTGCCGACATACTTGACCGTGCCCTGCTTCGCGCCGGACGCTTCGACCGTCAGATT 60619 Query 175687 CAAGTGG 175693 | |||| Sbjct 60618 TACGTGG 60612 >seq3869 Length=139515 Score = 98.7 bits (108), Expect = 1e-15 Identities = 208/306 (68%), Gaps = 12/306 (4%) Strand=Plus/Minus Query 175384 TCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTC 175443 |||| | || | ||||| ||||||||||| ||||| || || | || | ||| | Sbjct 106207 TCTGGCTCAGATTTTGTTGAGATGTTTGTAGGTGTCGGAGCATCGCGTGTAAGGGATTTA 106148 Query 175444 TTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTG 175503 || || ||| ||||| || |||||||| || ||||| ||||| |||||||| Sbjct 106147 TTCGAGGAAGCCAAGCAAAATGCTCCTTGTATTGTGTTTATTGACGAGATAGATGCGGTT 106088 Query 175504 GGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAA---ATGACGAGAGAGAACAAACAATT 175560 | |||| ||| | | | || ||| | | ||||||||||||| || ||| | Sbjct 106087 G-CAAG--ACGTCGTGGTACCGGCATGGGCGGAGGCCATGACGAGAGAGAGCAGACATTG 106031 Query 175561 AATCAACTACTCACCGAGATGGATGGCTT---TGACAATGAGACTGGCATTGTGGTTATT 175617 ||||| || || |||||||||||| || | ||||| || || | || || Sbjct 106030 AATCAGCTCCTTGTCGAGATGGATGGGTTCGGAGTTAATGA---AGGAATAATTGTAATG 105974 Query 175618 GCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 || ||||| || || |||||||| |||||| ||| | | || ||||| ||||||||| Sbjct 105973 GCTGCCACAAACCGTGTGGATATTCTTGATACAGCCATAATGCGTCCGGGACGTTTTGAT 105914 Query 175678 CGCAAG 175683 | ||| Sbjct 105913 AGAAAG 105908 >seq4856 Length=24448 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/281 (68%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| |||||||| |||||||| ||||||| | || || || | || | || Sbjct 13769 TTTGTAGAGATGTTCGTTGGTGTCGGTGCCAGCCGAGTCCGTGACTTGTTCAAGCAGGCT 13828 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||||| || |||||| |||| ||||| || ||||| || | || || || Sbjct 13829 CGTGAAAAGGCTCCTTGTATTATCTTTATTGACGAAATTGACGCAATCGGAAAAAGCCGA 13888 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | ||| | | | ||||| ||||||| |||| || ||| | || || || | | Sbjct 13889 ATGAACGGT--TTTTCTAGCAA-TGACGAGCGAGAGCAGACATTAAACCAGCTTTTGGTC 13945 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 || ||||| |||||||| || || | || || | || ||||||| || || || | Sbjct 13946 GAAATGGACGGCTTTGATAACGAAAAGGGGCTTATCATTCTTGCGGCGACAAACCGTGCT 14005 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 ||||||||||| |||| | || | ||||| |||||||| Sbjct 14006 GATATCCTTGACCCCGCCTTGCTCAGACCGGGCCGTTTTGA 14046 >seq3028 Length=109478 Score = 87.8 bits (96), Expect = 2e-12 Identities = 322/493 (65%), Gaps = 10/493 (2%) Strand=Plus/Plus Query 175215 CAAAG-ATGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAA 175273 ||||| | ||| | ||||||| ||||| || ||||| | || ||| ||| ||| Sbjct 21140 CAAAGCAGGAAGTGCAAGAGATAGTGGAGTTCCTCAAAAATCCTAAGAAATACAC-GGAC 21198 Query 175274 GT-GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACC 175332 | || | ||||| || || || || |||| ||| || || || || ||||| Sbjct 21199 CTCGGCGGAAAGATTCCAAAGGGTGCACTGCTCGTAGGTCCTCCGGGAACAGGTAAGACT 21258 Query 175333 CTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGC 175391 || | || |||| | || ||||| || || |||||| || ||| ||| | | | Sbjct 21259 CTGTTGGCGAAAGCCGTGGCTGGTGAGGCAGGAGTGCCATTCTTC-AGTCTCTCCGGCTC 21317 Query 175392 AAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAAT 175451 | || ||||||||||| ||||||||||| || | | || || || ||||| | Sbjct 21318 TGAGTTCGTGGAGATGTTCGTTGGTGTGGGAGCAAGCCGAGTACGTGACCTCTTCAGACA 21377 Query 175452 CGCCCGCGA-AAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGG-CAAG 175509 ||| || ||||| || || || |||||||| || |||||||| || | || | | Sbjct 21378 AGCCAAGGAGAAATCT-CCTTGCATAGTCTTCATAGACGAGATTGACGCCATAGGACGTG 21436 Query 175510 CAAC--GCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAAC 175567 ||| ||| ||| | ||| | || |||||||||||| || | || ||| Sbjct 21437 CAAGAAGCAAGTCTGTTTCCATGGGTGGTAACGACGAGAGAGAAAGCACTCTCAACCAAT 21496 Query 175568 TACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTA 175627 | | || |||||||| ||||||| || | | ||| || | | | ||||| || | Sbjct 21497 TGTTGACTGAGATGGACGGCTTTGGCACGAACAGTGGTATAATTATATTAGCGGCGACAA 21556 Query 175628 ATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATCC 175687 | || | ||||| || ||| | || ||| | | | || |||||||| | |||| | Sbjct 21557 ACCGAGCTGATATTCTCGATAAAGCTCTCTTAAGAGCCGGACGTTTTGACAGACAGATTC 21616 Query 175688 AAGTGGGTCTTCC 175700 | |||| ||||| Sbjct 21617 ATGTGGACCTTCC 21629 >seq1764 Length=18778 Score = 86.0 bits (94), Expect = 7e-12 Identities = 207/310 (67%), Gaps = 10/310 (3%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| |||||||| ||||| || ||||| | || || ||| | ||| | ||| Sbjct 16028 TTTGTAGAGATGTTCGTTGGAGTAGGTGCTTCCCGTGTACGTGATTTGTTTCAGGAGGCC 15969 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 ||||| || ||||| || || || |||||||| ||||| || | || | |||| Sbjct 15968 AAACAAAATGCGCCGTGTATAGTGTTTATCGATGAGATAGATGCTGTTGCCAGACGACGC 15909 Query 175516 AGCGCTGGT--GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | | ||| || || | | |||||||| | || || || | ||||| || || Sbjct 15908 GGTACAGGTATGGGCGGC--GGACATGACGAGCGCGAGCAGACTTTGAATCAGCTGCTTG 15851 Query 175574 CCGAGATGGATGGCTT---TGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATC 175630 ||||||||||| || || ||| || |||||| | ||||| || || || || | Sbjct 15850 TTGAGATGGATGGTTTTGGTGTCAACGA---AGGCATTATTGTTATGGCAGCTACCAACC 15794 Query 175631 GCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATCCAAG 175690 |||| ||||| ||||| | || | | || || || ||||||||| | || | | | Sbjct 15793 GCGTAGATATACTTGACCAGGCGATTATGCGTCCTGGACGTTTTGATAGAAAAGTATACG 15734 Query 175691 TGGGTCTTCC 175700 | |||| ||| Sbjct 15733 TAGGTCGTCC 15724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596531576145120