Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq140 140 1e-27 seq1956 113 1e-19 seq4856 109 2e-18 seq4587 102 2e-16 seq3888 98.7 3e-15 seq4017 96.9 1e-14 seq799 89.7 2e-12 seq1 86.0 2e-11 >seq140 Length=204551 Score = 140 bits (154), Expect = 1e-27 Identities = 343/510 (67%), Gaps = 14/510 (3%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 || |||||| || || | ||| ||||| || || || | ||| | | ||| || || Sbjct 37147 CCGATCAAATCTTCCCGGACGCAACAATGCCGGATCCAAAACATCAGGACGGTTAGTCGC 37206 Query 288909 TGCCAATACAACAATAGATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGAT 288967 || | || || || |||| ||||||| |||||||||||| || | ||||| Sbjct 37207 CGCAATTAAAATAACGTTTTCG-TTTGCTTCAAATCCATCCATCTCAACCAAGAGTTGAT 37265 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttt 289027 | |||||||| || | ||||||||| || | | || || | | ||| | Sbjct 37266 TTAGTGTTTGCTCACGTTCATCATTACCGCCACCTAAA---CCGGCACCGCGA---TGAC 37319 Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 ||||| ||||||||||| ||||| |||| || ||||| | ||||| | || | Sbjct 37320 GCCCAACCGCATCAATTTCATCAATAAAAAGCAAGCACGGCGCATTTTTCTTTGCTTGCG 37379 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||| | || | ||||| ||||| || | ||| ||| |||| || ||||| || || Sbjct 37380 CAAACATATCGCGCACACGCGATGCACCGACACCCACAAACATCTCCACAAAATCCGAGC 37439 Query 289148 CGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 |||| | |||| | || | ||||| ||||| || || |||||| | || || | || Sbjct 37440 CGGA-AATTGAGAAAAACGGCACATTAGCTTCACCGGCAACTGCCTTTGCAAGCAAGGTT 37498 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGA 289265 ||||| ||||| || ||||| | | | ||| |||||||| | |||| | |||| || Sbjct 37499 TTACCGGTTCCCGGAGGTCCGACAAGCAAAACACCCTTTGGAATTTTTCCTCCCA--AGC 37556 Query 289266 CTTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 || | | | || ||||| ||||| || | |||||| || | ||| | || | | Sbjct 37557 GTTGAAACTTTTGCGGATCTTTCAAAAAGTCAATAATTTCTTCCAATTCCTGCTTAGATT 37616 Query 289325 CATCACATCCTGCTACATCAGCAAAAGTAA 289354 |||| || || ||||| |||||||||| Sbjct 37617 CATCTGCGCCGGCAACATCGGCAAAAGTAA 37646 >seq1956 Length=35610 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||||| |||||||||||| |||||||||| | || |||| || ||| | || | Sbjct 3577 TACCAATAGCATCAATTTCATCAATGAAAACAATGCATGGAGCTTTCTGTTTAGCTTGTT 3636 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 || | ||||| || | |||||||||| ||| ||| ||||||| || || |||||| Sbjct 3637 GGAAGAGGTCTCTAACCCTTGATGCTCCAACACCTACAAACATTTCCACGAAATCAGAAC 3696 Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | |||| || || | ||||| ||||||||||| || || | || || | |||| Sbjct 3697 CAGATAGAGAAAAAAACGAGACATTAGCTTCGCCTGCAACGGCTTTAGCGAGCAAAGTCT 3756 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 |||| ||||| || ||||| | | || | |||||| || Sbjct 3757 TACCAGTTCCTGGAGGTCCGACAAGAAGGATTCCCTTAGG 3796 >seq4856 Length=24448 Score = 109 bits (120), Expect = 2e-18 Identities = 224/329 (68%), Gaps = 8/329 (2%) Strand=Plus/Minus Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 |||| || | || |||||||||||||| || || | ||| |||| ||| || || Sbjct 13883 TTTTTCCGATTGCGTCAATTTCGTCAATAAAGATAATACAAGGAGCCTTT--TCACGAGC 13826 Query 289085 TTGC--AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 ||| || || || | || ||| || || | |||||| |||| |||||||| || Sbjct 13825 CTGCTTGAACAAGTCACGGACTCGGCTGGCACCGACACCAACGAACATCTCTACAAAATC 13766 Query 289143 AGAA--GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 ||| || ||| || || ||| | || ||| ||||| || || || | || ||| Sbjct 13765 TGAACCGCTGATTCT--AAAGAAAGGAACCCCTGCCTCGCCAGCGACAGCACGGGCAAGA 13708 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 || || ||||| ||||| || ||||| | | ||||| |||||||| | ||| | ||| Sbjct 13707 AGCGTTTTACCGGTTCCCGGAGGTCCTACAAGAAGAACGCCCTTTGGAATTTTACCGCCA 13648 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | | ||||||| | || ||||| || || || | |||| |||| || | || Sbjct 13647 ATATCCGTATATTTTTTCGGAGATTTTAAGAAATCAACGACTTCCACAAGCTCTTCCTTG 13588 Query 289321 GCCTCATCACATCCTGCTACATCAGCAAA 289349 || |||||| ||||| |||||||| || Sbjct 13587 GCTTCATCAACGCCTGCAACATCAGCGAA 13559 >seq4587 Length=20029 Score = 102 bits (112), Expect = 2e-16 Identities = 228/335 (68%), Gaps = 8/335 (2%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || || || |||||||||||||||||||| | || || ||||||| | || |||| Sbjct 15520 CCTACCGCGTCAATTTCGTCAATGAAAATTATGCAGGGCGAATTTTTCTTTGCCTGTGCA 15461 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| || | || | || || |||| ||| ||| ||||||| ||||| ||| || Sbjct 15460 AATAAATCACGAACTCTTGACGCGCCAACACCTACAAACATTTCAACAAAATCA-CTGCC 15402 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | | |||| | || | || || || ||||| || ||| | || || | || || Sbjct 15401 GCTGATTGAGAAAAACGCAACGCCCGCCTCACCTGCAACCGCCTTAGCAAGCAAAGTTTT 15342 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG--TACTTTTGCCCCAGCAGAC 289266 |||||| || || ||||| | || ||| |||||||| ||| | |||| | | Sbjct 15341 ACCTGTGCCGGGCGGTCCAAAAAGTAAAACGCCCTTTGGAATACGTGCGCCCAA--ATCG 15284 Query 289267 TTATATTTCTCAGGGCTCTTTAA-AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 ||| |||| | || | ||||| ||||||||| | ||| | | ||| | || ||||| Sbjct 15283 TTAAATTT-TTTCGGATGTTTAAGAAATTCTACGACTTCTTGTAATTCTTCCTTAGCCTC 15225 Query 289326 ATCACATCCTGCTACATCAGCAAAAGTAATATTAA 289360 || ||||| || ||| |||||| || |||| Sbjct 15224 GTCTGCGCCTGCAACGTCATTAAAAGTGATTTTAA 15190 >seq3888 Length=36294 Score = 98.7 bits (108), Expect = 3e-15 Identities = 177/256 (69%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || || || ||||| || || || | ||||||| ||||||||||||| || ||| | Sbjct 15449 AAACAAATCCCTAACACGAGAAGCACCTACACCAACAAACATTTCTACAAAATCTGAACC 15508 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | | ||| | |||| ||| || ||||||||||| ||| | || | ||| |||| Sbjct 15509 T-ACAAGTGAGAAAAATGGTACTCCGGCCTCGCCTGCTACAGCCTTAGCTAAAAGCGTCT 15567 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | |||||||| || || || | || || ||||||| || | || || ||| Sbjct 15568 TTCCTGTTCCCGGAGGACCAACCAAAAGTGCTCCCTTCGGAAGCTTGGCGCCAATCTCGG 15627 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 | ||||||| ||| | | | ||| || || ||||||| || | ||| ||||||| Sbjct 15628 TGTATTTCTTAGGATTGTGAAGAAAGTCAACCATTTCCTGCAGAGATTCTTTGGCCTCAT 15687 Query 289328 CACATCCTGCTACATC 289343 | ||||||||||| Sbjct 15688 CCTGCCCTGCTACATC 15703 >seq4017 Length=30875 Score = 96.9 bits (106), Expect = 1e-14 Identities = 202/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC-GCAATTG 289087 ||||| ||||| |||||||| ||||| || | || |||| ||||| || || | Sbjct 10694 ACCAATGGCATCGATTTCGTCGATGAAGATGATGCATGGAGC-TTTTGCCTTTGCTTGAG 10752 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 || | || | |||||| || || | ||| || |||| || || ||||||||| Sbjct 10753 TGAAGAGGTCGCGTACACGACTAGCACCCACACCTACGAACATCTCCACGAATTCAGAAC 10812 Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | | ||||| ||| | ||||| ||||| || ||| | || ||||| |||| Sbjct 10813 CGGAGAGGGAGAAGAATGGTACGTCGGCTTCACCTGCAACAGCCTTTGCGAGAAGGGTCT 10872 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 |||||||||| || || || ||| | | | |||||||| | | || || | | || Sbjct 10873 TACCTGTTCCTGGAGGGCCTACTAGCAAAGCGCCCTTTGG-AATCTTACCTCCAAGGTCT 10931 Query 289268 -TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | ||||| | ||| |||| || || || ||||| |||| | ||| | ||| || Sbjct 10932 GTGTATTTTTTAGGATTCTTCAAGAACTCAACAATCTCCTGCACTTCTTGTTTAGC 10987 >seq799 Length=10040 Score = 89.7 bits (98), Expect = 2e-12 Identities = 190/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| || || || ||||| ||||||| | || || | |||| |||| ||| Sbjct 2963 CCAACGGCGTCTATCTCGTCTATGAAAACAATGCATGGTGCTTTTTCCTTCGCC--TGCC 3020 Query 289090 --AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 || | ||||| || || || || || | || || |||| || || || || | | Sbjct 3021 GGAAAAGGTCTCTCACGCGTGAAGCGCCGACGCCCACGAACATCTCCACGAAGTC-GCTG 3079 Query 289148 CGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | | | | || | ||| | |||||| |||||||| || || ||| | || || |||||| Sbjct 3080 CCGCTTATGGAGAAGAAAGGTACATTGGCTTCGCCGGCCACGGCCTTGGCAAGCAGTGTC 3139 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || || ||||| || || ||| | | || ||||||| || | |||| | || | | Sbjct 3140 TTTCCCGTTCCGGGAGGGCCCACGAGGAGCGCTCCCTTGGGAATTTTTCCGCCGAGGGCC 3199 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC 289305 | ||||||| |||| |||| | || |||||||||||| Sbjct 3200 GTGTATTTCTGAGGGTTCTTGAGGAAATCTACAATTTCC 3238 >seq1 Length=240337 Score = 86.0 bits (94), Expect = 2e-11 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 ||||| ||||| ||| || | ||| ||| |||| ||||| || |||||| | || | | Sbjct 205715 TCTCTCACACGACTTGCACCTACACCGACAAACATCTCTACGAAGTCAGAACCCGACA-T 205657 Query 289156 TGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGT 289214 || | ||||| ||| || || || || || || |||| || || ||||||||||| Sbjct 205656 GGAGAAGAATGGCACACCAGCCTCACCCGCAACGGCTTTCGCAAGCAGGGTCTTACCTGT 205597 Query 289215 TCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTA-CTTTTGCCCCAG--CAGACTTATA 289271 |||||| ||||| | | | | ||||| |||| ||| || || ||| |||| Sbjct 205596 TCCAGGAGGTCCGACAAGCAATGCGCCCTTAGGTATCTTACCTCCGAGTTCAG---TATA 205540 Query 289272 TTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 ||||| ||| |||| | ||| || || ||||||| | ||| | ||||| Sbjct 205539 TTTCTGAGGATTCTTCAGAAACTCCACGATTTCCTGTACTTCCTGCTTTGC 205489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471721444776363