Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq3148 147 7e-31 seq4483 132 2e-26 seq4079 129 2e-25 seq4239 120 1e-22 seq3058 120 1e-22 seq4300 114 4e-21 seq496 113 1e-20 seq1312 109 2e-19 seq2179 105 2e-18 seq3449 86.0 2e-12 >seq3148 Length=25767 Score = 147 bits (162), Expect = 7e-31 Identities = 181/247 (73%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 40244 GTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTC 40303 ||| ||||||||| |||||| |||||||| || | ||| |||||||| ||||| ||||| Sbjct 8168 GTCGTCGAAGTCGGTGTCGATATCGGGCAGCGAGATGCGGTCGGGGTTGAGGAAACGCTC 8109 Query 40304 GAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAG 40363 ||| | ||| ||| || ||||||||||| | |||||| || || |||||| |||| Sbjct 8108 GAACAGGAGGTCGTACTTCAGCGGGTCGATCTTGGTGATGCCCAGACAGTAGGCCACCAC 8049 Query 40364 CGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCT---TCGCCCA 40420 ||||| |||||| || || || ||||| |||||||| || ||| | ||| | Sbjct 8048 TGAACCTGCCGCACTACCACGGCCGGGGCCCACCCAGACGTCGAGCTCGTCGCGGGCCGA 7989 Query 40421 GCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTC 40480 |||||||||| |||| ||||||||| ||||| |||||| | || |||| Sbjct 7988 ATTGATGAAGTCCTGCACGATGAGGAAGTAGCCGGGGAAGCCCATCGTCTTCATGATGTG 7929 Query 40481 GATCTCG 40487 || |||| Sbjct 7928 GAGCTCG 7922 >seq4483 Length=5740 Score = 132 bits (146), Expect = 2e-26 Identities = 212/302 (70%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 40167 CCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATG 40226 ||||| || ||| ||||| || |||||| ||||| ||| || || |||| | Sbjct 3561 CCGTAGGTGATGATATGCGCCACGCGGTCGGCTCCGTATTTCTCCGTCACCCACTGCAAT 3620 Query 40227 ACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCG 40286 |||| ||| || | ||||||||| || | ||||| |||||||| || | || ||| Sbjct 3621 ACCTTGCCTCGCCCGTCGTCATCGAAATCCACGTCGATATCGGGCAGTGAGATACGGTCG 3680 Query 40287 GGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCG 40346 || || ||||| |||||||| | ||| ||| | || ||| || | ||||| ||| Sbjct 3681 GGATTGAGGAAACGCTCGAACAGGAGATCGTATTTCAACGGATCCACCATCGTGATGCCG 3740 Query 40347 AGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCC- 40405 ||| |||||| |||| || ||||| || || || ||||| || || ||||| || || Sbjct 3741 AGGCAGTAGGCCACCACAGATCCGGCGGCGGAACCACGCCCCGGACCAACCCATACGCCC 3800 Query 40406 -GTTCTC-CTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCC 40463 ||||| ||||||| ||| | ||| |||||||||||||| |||||| ||| Sbjct 3801 AGTTCTTTCTTCGCCACATTGATATAATCCTGTACGACGAGGAAGTAGCCCGGGAATCCC 3860 Query 40464 AT 40465 || Sbjct 3861 AT 3862 >seq4079 Length=28942 Score = 129 bits (142), Expect = 2e-25 Identities = 175/242 (72%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 40227 ACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCG 40286 |||| |||||| | || ||||||||| | |||| |||||||| ||| | || ||| Sbjct 12020 ACCTTGCCACGGCCATCATCGTCGAAGTCGGTATCGATATCGGGCAGGGAGATACGGTCG 12079 Query 40287 GGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCG 40346 ||||||||||| |||||||| | || ||| || ||||||||||| | ||||| || Sbjct 12080 GGGTTCAGGAAACGCTCGAACAGCAGGTCGTACTTCAGCGGGTCGATCTTCGTGATGCCC 12139 Query 40347 AGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACC--CAGACCC 40404 ||| |||||| |||| |||||| || ||||| || || || || ||| || ||| Sbjct 12140 AGGCAGTAGGCCACCACACTACCGGCTGCCGAGCCACGGCCTGGCCCCACCATCACGCCC 12199 Query 40405 CGTTC-TCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCC 40463 |||| || || || |||||||||| |||| ||||||||| ||||| ||| Sbjct 12200 AGTTCGTCGCGGGCGGAGTTGATGAAGTCCTGTACGATGAGGAAGTAGCCGGGGAAGCCC 12259 Query 40464 AT 40465 || Sbjct 12260 AT 12261 >seq4239 Length=97330 Score = 120 bits (132), Expect = 1e-22 Identities = 172/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 40227 ACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCG 40286 |||| ||| |||| ||| |||||||| | |||| |||||||| || | ||| || Sbjct 51816 ACCTTGCCCCGACCGTCGTCGTCGAAGTCAGTATCGATATCGGGCAGAGAGATGCGGTCA 51757 Query 40287 GGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCG 40346 ||||||||||| ||||| |||| | ||| || |||||||||||| || || || Sbjct 51756 GGGTTCAGGAAACGCTCAAAGAGCAAATCGTACTTCAGCGGGTCGAGCCTCGTAATGCCC 51697 Query 40347 AGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCG 40406 ||| || || |||| ||| || ||||| || || | |||||||| ||||| || || Sbjct 51696 AGGCAATAAGCAACCACCGACCCCGCCGCCGAACCTCTGCCAGGGCCAACCCACACACCC 51637 Query 40407 TTCTCCTTC---GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCC 40463 ||| ||| || | | |||||||||| || | ||||||||| ||||| ||| Sbjct 51636 AGCTCGTTCCTTGCGCTGTTGATGAAGTCCTGCACAATGAGGAAGTAGCCAGGGAAGCCC 51577 Query 40464 AT 40465 || Sbjct 51576 AT 51575 >seq3058 Length=36741 Score = 120 bits (132), Expect = 1e-22 Identities = 162/225 (72%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 40244 GTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTC 40303 ||| |||||||| |||||| ||| |||| || | || || || || ||||| ||||| Sbjct 17884 GTCGTCGAAGTCAGTGTCGATATCTGGCAGTGAGATACGGTCAGGATTGAGGAAACGCTC 17943 Query 40304 GAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAG 40363 ||| | || | | || || ||||||||| | || || ||||| ||||||||||| Sbjct 17944 GAACAGCAGGTCATACTTCAACGGGTCGAGCTTAGTTATGCCGAGACAGTAGGCGACCAC 18003 Query 40364 CGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCT---TCGCCCA 40420 || ||||| || ||||| || ||||| || ||||| || | ||||| |||| | Sbjct 18004 TGAGCCGGCAGCCGAGCCACGTCCAGGTCCTACCCACACGTCAAGCTCCTGTCGCGCCGA 18063 Query 40421 GCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCAT 40465 | |||||||||| || | ||||||||| |||||| ||||| Sbjct 18064 GTTGATGAAGTCCTGCACAATGAGGAAGTAACCCGGGAAGCCCAT 18108 >seq4300 Length=42233 Score = 114 bits (126), Expect = 4e-21 Identities = 184/260 (71%), Gaps = 7/260 (3%) Strand=Plus/Plus Query 40215 ACGTACTGGATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATG 40274 ||||||||||| |||| | || | ||| |||||||| | ||||| ||||||||| Sbjct 9702 ACGTACTGGATTACCTTGTAGCGGCCTTCGTCGTCGAAGTCCACGTCGATGTCGGGCATG 9761 Query 40275 GACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGG 40334 | |||||| || ||||||||||||||||| | ||| ||| | ||||| ||| Sbjct 9762 CTGATGCGCTCCGGATTCAGGAAGCGCTCGAACAGGAGGTCGTAGCGTATGGGGTCCAGG 9821 Query 40335 TCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAG---CCCCGCCCAGGG 40391 | |||||| | ||| |||| ||||| || | | |||| | | || ||||| || Sbjct 9822 TTGGTGATGCGCAGGCAGTAGCTGACCA-CG--CTGCCCGCGGCGCTTCCGCGCCCCGGC 9878 Query 40392 CCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTAC 40451 || ||| | ||||||| | ||| |||||| ||| |||||| |||| ||||| || Sbjct 9879 CCCACCGAAACCCCGTGCGTCTTGGCCCAGTTGATAAAGTCCTGAACGATAAGGAAATAG 9938 Query 40452 GACGGGAACCCCAT-CTGGA 40470 ||| || ||||| ||||| Sbjct 9939 TCCGGAAAGCCCATCCTGGA 9958 >seq496 Length=23570 Score = 113 bits (124), Expect = 1e-20 Identities = 163/227 (72%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 40244 GTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTC 40303 ||| ||||||||| | |||| |||||||| ||| | ||| || ||||||||||| || || Sbjct 16957 GTCGTCGAAGTCGGTATCGATATCGGGCAGGGAGATGCGGTCAGGGTTCAGGAAACGTTC 17016 Query 40304 GAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAG 40363 || | || | | || || ||||| || | || || || ||| ||||| |||| Sbjct 17017 AAACAGCAGGTCATACTTCAAGGGGTCCAGTTTCGTAATGCCCAGGCAATAGGCCACCAC 17076 Query 40364 CGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGAC--CCCGTTCTCCTTC--GCCC 40419 |||||| |||||||| || || || || ||||| || || |||| | | | || Sbjct 17077 GCTACCGGCAGCAGAGCCACGGCCCGGTCCCACCCACACGTCCAGTTC-CTTGCGGGCGG 17135 Query 40420 AGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATC 40466 || |||||||||| |||| ||||||||| |||||| |||||| Sbjct 17136 AGTTGATGAAGTCCTGCACGATGAGGAAGTAACCCGGGAATCCCATC 17182 >seq1312 Length=3891 Score = 109 bits (120), Expect = 2e-19 Identities = 231/341 (68%), Gaps = 9/341 (3%) Strand=Plus/Minus Query 40166 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40225 |||||| || ||| || || || || ||||||||||| || ||| || |||| | Sbjct 3335 TCCGTAGGTGATGATATGGGCCACTTTCTCGGCCCCGTATTTGTCGGTCACCCACTGCAG 3276 Query 40226 GACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTC 40285 |||| || || | ||| |||||||| | ||||| ||| || | ||| | || || Sbjct 3275 CACCTTACCTCGTCCGTCGTCGTCGAAGTCCACGTCGATATCCGGGAGGGAGATACGGTC 3216 Query 40286 GGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCC 40345 ||||| ||||| |||||||| | ||| ||| || | ||||| | ||||| || Sbjct 3215 CGGGTTGAGGAATCGCTCGAACAGGAGGTCGTACTTGATGGGGTCCACCATCGTGATGCC 3156 Query 40346 GAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCC 40405 ||| ||| || || || || || || || || || ||||| || ||||| || || Sbjct 3155 CAGGCAGTATGCCACTGTGGAGCCTGCTGCCGACCCACGGCCAGGTCCCACCCACACGCC 3096 Query 40406 GTTCTC---CTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCC 40462 | ||| | ||||| ||| |||| | |||||||||||||| |||||| || Sbjct 3095 GAGCTCGTTCCTCGCCGCATTGATATAGTCGGATACGACGAGGAAGTAGCCCGGGAAGCC 3036 Query 40463 CA---TCTGGATGATCATGTCGATCTCGTACTGGAGCTGCT 40500 || ||| ||||| ||| | |||| ||| || ||||| Sbjct 3035 CATGGTCTTCATGAT-ATG--CAGCTCGAACTTGATCTGCT 2998 >seq2179 Length=6749 Score = 105 bits (116), Expect = 2e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40179 ATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGA 40238 |||||||| || |||| |||||| || ||| ||||| | ||| ||||| ||| Sbjct 739 ATCTGCGCCACGCGGTCGCTCCCGTATTTTTCGGTAACGTAGTCGATAACCTCCTGACGT 798 Query 40239 CGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAG 40298 | || |||||| || || | ||| ||||| || ||||||||||| |||| ||| Sbjct 799 CTTTCGTAGCAGAAGTCAATATCAAAATCAGGCATTGAAACGCGCTCGGGATTCAAAAAG 858 Query 40299 CGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCG 40358 ||||| || ||||| ||| | || |||||| ||||||||||| |||| ||| || Sbjct 859 CGCTCAAAAATGAGGTCGTATTTCATCGGGTCAAGGTCGGTGATTCCGATACAGTAAGCT 918 Query 40359 ACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGAC 40396 | ||||| || || | || || ||||| || || || Sbjct 919 GCGAGCGAGCCCGCGCCCGAACCTCGCCCGGGACCTAC 956 >seq3449 Length=4901 Score = 86.0 bits (94), Expect = 2e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 40227 ACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCG 40286 |||| |||||| | |||||||||||| | || | |||||||| || | || ||| Sbjct 4737 ACCTTGCCACGCCCGTCGTCATCGAAGTCAGTATCAATATCGGGCAGCGAGATACGGTCG 4796 Query 40287 GGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCG 40346 || |||||||| ||||| || | || ||| || || ||||| | | ||||| || Sbjct 4797 GGATTCAGGAAACGCTCAAACAGCAGGTCGTACTTCATGGGGTCTATCTTCGTGATGCCC 4856 Query 40347 AGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGG 40391 | | |||||| |||| ||| ||||| || || || || |||||| Sbjct 4857 AAGCAGTAGGCCACCACCGAGCCGGCAGCCGAACCACGTCCAGGG 4901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163314910581282