Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq2964 104 3e-17 seq2619 84.2 2e-11 >seq2964 Length=2227 Score = 104 bits (114), Expect = 3e-17 Identities = 495/770 (64%), Gaps = 30/770 (4%) Strand=Plus/Minus Query 152271 AACGAGAACGCGAACAAAGAT-GCAAGGGTATTCCCGACACAGCGCGATTTGCTGGCGGG 152329 |||||||| || ||||| || |||||| |||||| ||| ||||| || | || || || Sbjct 1855 AACGAGAATGCCAACAAGGACAGCAAGGTTATTCC-GACCCAGCGTGACCTTCTTGCAGG 1797 Query 152330 TATCGTAGCGAAGCATTTCGCCCGTAATCATATCCTCCCGAAACATATCGTAGAAGCGCA 152389 ||| || || || | || | || || || || | | | || ||| || Sbjct 1796 TATTGTTGCACGCCACTATGCAAAACAGCACATGCTTCCTCAGGAAGTTGTGAGAGCCCA 1737 Query 152390 TGATTCCGGTGACATCCACTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTAA 152449 ||| || || ||||| | ||||||||| |||||| |||||| ||| || Sbjct 1736 TGAAAGAGGGGAGATCCATTTTCACGATCTCGACTATTCACCGTTCTTCCCGATGTTCAA 1677 Query 152450 CTGCTGTCTGGTTGACCTGAAAGGTATGCTGGAGAACGGTTTTAAAATGGGTAACGCGGA 152509 ||| ||| | || | || |||||||| |||||| || |||||||| || || Sbjct 1676 CTGTATGCTGATCGATGTCGGCGGAATGCTGGAACGCGGTTTCAAGATGGGTAATGCCGA 1617 Query 152510 CATTGAACCGCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCACA 152569 || ||| | ||||| || ||| || || ||||| | | || ||||||| ||| || Sbjct 1616 AATCGAATCACCTAAGTCAATCAGTACCGCAACCGCGGTTACCGCACAGATCATCGCCCA 1557 Query 152570 GATTGCCTCTCACCAGTACGGCGGGACAACCTTTGCGAACG-TG-GATAAAGTGCTGGCT 152627 | ||||| || |||||||| |||||| | | | || || ||| | ||||| || Sbjct 1556 GGTTGCCAGCCATATCTACGGCGGTACAACCAT--CAACCGCTGTGATGAGGTGCTTGCC 1499 Query 152628 CCATACGTCGAAATGACATTCTTCAAACATCTGCACGATG-CTGAACATTACGGTATCGA 152686 || || || | || ||| | || ||| | | |||| | || || | | Sbjct 1498 CCGTATGTTACCAAGAGTTTCATGAAGTATCAGAA-GATGGCCGA-------GGAGTGGC 1447 Query 152687 ACACTA-TAATGATTATGTGTATGCGATTGAAAAGACTGAAAAAGATGTG-TATGATGCG 152744 ||| | | || | | ||| | |||||||| || ||| ||||| || Sbjct 1446 ACATTCCTGATCCGGACAGCTTTGCCCGAGCCCGTACTGAAAAGGA-GTGCTATGACGCC 1388 Query 152745 TTCCAGTCCTATGAGTATGAAGTAAACACCCTACATACTGCCAACGGACAAACCCCGTTT 152804 |||||||| ||| ||||||||||||||||| ||||| ||||||| || || ||||| Sbjct 1387 TTCCAGTCTCTTGAATATGAAGTAAACACCCTGCATACCTCCAACGGTCAGACTCCGTTC 1328 Query 152805 GTTACCATCACTTTCGGTACTGGTACGAGCGATTATGA---ACGCATGATCCAGAAAGCG 152861 || || || ||||||| |||| | | | | || ||| |||||||||| | Sbjct 1327 GTAACTCTCGGTTTCGGT-CTGGGAACATC--CTGGGAGTCACGTCTGATCCAGAAGTCT 1271 Query 152862 ATCCTGAAAAACCGTATTCGCGGCCTTGGTAAAGAGGGTATTACTCCGGTATTCCCGAAA 152921 || ||||| ||| | ||| || || || | | ||| |||| ||||| || Sbjct 1270 ATTCTGAAGAACAGAATTGCTGGTCTCGGCCGCAATCACAGAACTGCGGTTTTCCCTAAG 1211 Query 152922 CTGGTTATGTTCATGGAAAAAGGAATTAACCTTGATCCAGAG---GATCAAAACTATGAC 152978 ||||| | ||| | | ||| | |||| | | |||| |||| ||||| || Sbjct 1210 CTGGTGTTTGCCATCAAGGAGGGACTGAACCGTAA---AGAGGGTGATCCTAACTACGAT 1154 Query 152979 ATCAAACAACTTGCCCTGGAATGTGCTTCGAAACGCATGTACCCAGATAT 153028 ||||| | || || || ||||| || || || | ||||| || ||||| Sbjct 1153 ATCAAGAAGCTGGCTCTTGAATGCGCCTCCAAGAGAATGTATCCGGATAT 1104 >seq2619 Length=11042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 173/254 (68%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 40565 GGATCATCGTTTCCGCATGGAATCCGGTTGATCTTGATGCAATGGCTTTGCGTCCGTGTC 40624 ||||||||||||| || |||||| | | || ||||| ||||| || ||| |||| Sbjct 2563 GGATCATCGTTTCAGCCTGGAATGCCGGAGAAATTGATAAGATGGCATTAGCTCCTTGTC 2504 Query 40625 ACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTT 40684 | | | |||||||| ||| | || ||| | ||| |||| ||||||||| Sbjct 2503 ATGCTCTTTTCCAGTTTTATGTAGTTAATAACAAATTATCTTGCCAGTTGTATCAGCGAA 2444 Query 40685 CGGTTGATGTC-TTCTTAGGGTTGCCGTTCAATATAGCCTCATACGCTCTCCTGACGCAT 40743 ||||||| ||||| | ||| || |||||||| || || ||||| || || ||| Sbjct 2443 GCTGTGATGTCTTTCTTGGTGTT-CCTTTCAATATTGCTAGTTATGCTCTTCTTACTCAT 2385 Query 40744 ATTATCGCTGATATTTGCGGGTATGAAGTAGGCGATCTGGTTTGGACTGGTGGTGATGTT 40803 || || || | |||| ||| || || ||| | |||||||| || || |||||| Sbjct 2384 ATGATGGCGCAGCAGTGCGATCTTGATGTTGGTGATTTTGTTTGGACCGGCGGAGATGTT 2325 Query 40804 CA--TATCTACAAA 40815 || ||| | |||| Sbjct 2324 CACTTATATTCAAA 2311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563762464899480