Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= NC_021348.1
Length=156558
Score E
Sequences producing significant alignments: (Bits) Value
seq3148 102 8e-17
seq4079 93.3 4e-14
seq1312 93.3 4e-14
seq112 93.3 4e-14
seq4669 91.5 1e-13
seq3449 84.2 2e-11
seq4303 82.4 8e-11
>seq3148
Length=25767
Score = 102 bits (112), Expect = 8e-17
Identities = 111/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 114586 GGCCCGGGCCGTGGCTCTGCCGGTGGCTCGCTGGTCACCTAC-GTCATGGGCATCACCTC 114644
||||| |||||||| ||| | || || |||| ||||| ||| |||||||||||
Sbjct 8019 GGCCCCGGCCGTGGTAGTGCGGCAGGTTCAGTGGTGGCCTACTGTC-TGGGCATCACCAA 8077
Query 114645 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGA 114704
|||||||||| | ||||||||||| |||||||||| || ||||||| |||||| |
Sbjct 8078 GATCGACCCGCTGAAGTACGACCTCCTGTTCGAGCGTTTCCTCAACCCCGACCGCATCTC 8137
Query 114705 CTTCCCCGACATCGACGTCGACTTC 114729
| ||||| |||||| |||||||
Sbjct 8138 GCTGCCCGATATCGACACCGACTTC 8162
Score = 89.7 bits (98), Expect = 5e-13
Identities = 116/157 (74%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 115637 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCC-GCAC-CGCCAAGGAGCTGGC 115694
||||||| |||||| ||||| ||||||||| |||| | || | ||| | || ||||
Sbjct 8977 ACACCTATGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGAC--AGTTGGC 9034
Query 115695 CGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGA 115754
| ||||||| |||||| ||| || || |||| ||| || ||||||||||| ||
Sbjct 9035 CAACTTCACCCGTGGCGAGAGCGACGCCCTTCGCAAGGCCATGGGTAAGAAGAAGATTGA 9094
Query 115755 GATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGC 115791
|||| |||||| || |||| ||||| |||| |||
Sbjct 9095 GATCGTCAACGCCATGAAGCCTAAGTTCATCGAGGGC 9131
>seq4079
Length=28942
Score = 93.3 bits (102), Expect = 4e-14
Identities = 119/162 (73%), Gaps = 8/162 (5%)
Strand=Plus/Minus
Query 115637 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGAT-CCGCAC---CGCCAAGGAGCTG 115692
|||||||||||||| ||||| ||||||||| |||| | || | |||| || ||
Sbjct 11228 ACACCTACGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGCC----AGTTG 11173
Query 115693 GCCGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATG 115752
|||| ||||||| |||||| ||| || ||||||| ||| || |||||||||| |
Sbjct 11172 GCCGACTTCACCCGCGGCGAGAGCGACGCCCTCCGTAAGGCCATGGGTAAGAAGAAGAAG 11113
Query 115753 GAGATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGCTGC 115794
|| ||| || | | || |||||||||| |||| ||| ||
Sbjct 11112 GACATCGTCGATGCCATGAAGCCCAAGTTCATCGAGGGCGGC 11071
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 114586 GGCCCGGGCCGTGGCTCTGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 114645
|| || ||||||||||| || | || |||| ||||| | |||||||||| |
Sbjct 12186 GGGCCAGGCCGTGGCTCGGCAGCCGGTAGTGTGGTGGCCTACTGCCTGGGCATCACGAAG 12127
Query 114646 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 114705
||||||||| | |||||||||||| |||||||||| || | ||||| ||||| | |
Sbjct 12126 ATCGACCCGCTGAAGTACGACCTGCTGTTCGAGCGTTTCCTGAACCCCGACCGTATCTCC 12067
Query 114706 TTCCCCGACATCGACGTCGACTTC 114729
| ||||| ||||| |||||||
Sbjct 12066 CTGCCCGATATCGATACCGACTTC 12043
>seq1312
Length=3891
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 114586 GGCCCGGGCCGTGGCTCTGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 114645
|| || |||||||| || || | ||||| || | ||| | |||||||||| |
Sbjct 3108 GGACCTGGCCGTGGGTCGGCAGCAGGCTCCACAGTGGCATACTGCCTGGGCATCACGATG 3167
Query 114646 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 114705
| ||||| |||||||||||||| |||||||||| || ||||||||||||| | |
Sbjct 3168 GTGGACCCCATCAAGTACGACCTCCTGTTCGAGCGATTCCTCAACCCGGACCGTATCTCC 3227
Query 114706 TTCCCCGACATCGACGTCGACTTC 114729
|||| || |||||||| ||||||
Sbjct 3228 CTCCCGGATATCGACGTGGACTTC 3251
>seq112
Length=216842
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 114586 GGCCCGGGCCGTGGCTCTGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 114645
|| || || || ||||| || | || ||| |||| |||| | | |||||||| |
Sbjct 52088 GGACCCGGACGAGGCTCGGCAGCCGGTTCGGTGGTGGCCTATTGCCTCGGCATCACACAG 52029
Query 114646 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 114705
|| |||||| |||||||||||||| |||||||||| || |||| || |||||| | |
Sbjct 52028 ATAGACCCGCTCAAGTACGACCTGCTGTTCGAGCGGTTCCTCAATCCCGACCGCATCTCC 51969
Query 114706 TTCCCCGACATCGACGTCGACTTC 114729
| ||||| |||||| |||||||
Sbjct 51968 CTGCCCGATATCGACACCGACTTC 51945
>seq4669
Length=35002
Score = 91.5 bits (100), Expect = 1e-13
Identities = 96/124 (77%), Gaps = 7/124 (6%)
Strand=Plus/Plus
Query 115634 TGAACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGC---ACCGCCAAGGAGC 115690
|||| |||||||||||| ||||||||||||||| | || | | | | |||| |
Sbjct 8067 TGAA-ACCTACGGCATCACCGTCTACCAGGAGCAGGTCATGCTCCTGAGCCGCAAG---C 8122
Query 115691 TGGCCGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGA 115750
| ||||| ||||||| ||||||||||| || || || |||| ||| |||||||||||||
Sbjct 8123 TCGCCGGCTTCACCCGCGGCGAGGCCGACCGCCTCCGCAAGGCCATGGGCAAGAAGAAGA 8182
Query 115751 TGGA 115754
| ||
Sbjct 8183 TAGA 8186
Score = 82.4 bits (90), Expect = 8e-11
Identities = 110/151 (73%), Gaps = 4/151 (3%)
Strand=Plus/Plus
Query 114586 GGCCCGGGCCGTGGCTCTGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 114645
||||| ||||| || || || | || | ||| | ||| | |||| ||||||
Sbjct 6976 GGCCCCGGCCGAGGTTCCGCAGCCGGAAGCGTCGTCGCTTACTGCCTGGGTATCACCAAC 7035
Query 114646 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCCG 114703
||||||| |||||||| |||| |||||||||| || |||| || |||||| | ||
Sbjct 7036 CTCGACCCCCTCAAGTACAACCTCCTGTTCGAGCGTTTCCTCAATCCCGACCGCATCTCG 7095
Query 114704 ACTTCCCCGACATCGACGTCGACTTCCAGAA 114734
| | ||||| ||||||||||||||| ||||
Sbjct 7096 A--TGCCCGATATCGACGTCGACTTCGAGAA 7124
>seq3449
Length=4901
Score = 84.2 bits (92), Expect = 2e-11
Identities = 116/160 (73%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 115637 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGC-ACCGCCAAGGAGCTGGCC 115695
|||||||||||||| |||||| ||||||||| |||| | | ||| | ||||||||
Sbjct 3945 ACACCTACGGCATCACGGTCTATCAGGAGCAGGTGATGCTCTTGAGCCGA-CAGCTGGCC 3887
Query 115696 GGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAG 115755
| ||||||| || ||| ||| ||||| |||| || || |||||||||| |||
Sbjct 3886 GACTTCACCCGCGGTGAGAGCGACGCTCTGCGAAAGGCGATGGGTAAGAAGAAGAAGGAC 3827
Query 115756 ATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGCTGCA 115795
||| | | | || |||| ||||| |||| ||| |||
Sbjct 3826 ATCGTAGATGCCATGAAGCCGAAGTTCATCGAGGGCGGCA 3787
>seq4303
Length=40773
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 96726 CGATGCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATC 96785
||| ||| | |||||||| ||||||||||| ||||||||||||| ||||||||||| |
Sbjct 6893 CGACGCGGAAATAGCTCAGTTGGTAGAGCGCGACCTTGCCAAGGTCGAGGTCGCGGGTCC 6952
Query 96786 GTAACCCGTTCTTCGCTC 96803
| | |||||| | |||||
Sbjct 6953 GAATCCCGTTTTCCGCTC 6970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500825676588720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |