Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_021348.1 Length=156558 Score E Sequences producing significant alignments: (Bits) Value seq3148 102 8e-17 seq4079 93.3 4e-14 seq1312 93.3 4e-14 seq112 93.3 4e-14 seq4669 91.5 1e-13 seq3449 84.2 2e-11 seq4303 82.4 8e-11 >seq3148 Length=25767 Score = 102 bits (112), Expect = 8e-17 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 114586 GGCCCGGGCCGTGGCTCTGCCGGTGGCTCGCTGGTCACCTAC-GTCATGGGCATCACCTC 114644 ||||| |||||||| ||| | || || |||| ||||| ||| ||||||||||| Sbjct 8019 GGCCCCGGCCGTGGTAGTGCGGCAGGTTCAGTGGTGGCCTACTGTC-TGGGCATCACCAA 8077 Query 114645 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGA 114704 |||||||||| | ||||||||||| |||||||||| || ||||||| |||||| | Sbjct 8078 GATCGACCCGCTGAAGTACGACCTCCTGTTCGAGCGTTTCCTCAACCCCGACCGCATCTC 8137 Query 114705 CTTCCCCGACATCGACGTCGACTTC 114729 | ||||| |||||| ||||||| Sbjct 8138 GCTGCCCGATATCGACACCGACTTC 8162 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 115637 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCC-GCAC-CGCCAAGGAGCTGGC 115694 ||||||| |||||| ||||| ||||||||| |||| | || | ||| | || |||| Sbjct 8977 ACACCTATGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGAC--AGTTGGC 9034 Query 115695 CGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGA 115754 | ||||||| |||||| ||| || || |||| ||| || ||||||||||| || Sbjct 9035 CAACTTCACCCGTGGCGAGAGCGACGCCCTTCGCAAGGCCATGGGTAAGAAGAAGATTGA 9094 Query 115755 GATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGC 115791 |||| |||||| || |||| ||||| |||| ||| Sbjct 9095 GATCGTCAACGCCATGAAGCCTAAGTTCATCGAGGGC 9131 >seq4079 Length=28942 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/162 (73%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 115637 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGAT-CCGCAC---CGCCAAGGAGCTG 115692 |||||||||||||| ||||| ||||||||| |||| | || | |||| || || Sbjct 11228 ACACCTACGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGCC----AGTTG 11173 Query 115693 GCCGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATG 115752 |||| ||||||| |||||| ||| || ||||||| ||| || |||||||||| | Sbjct 11172 GCCGACTTCACCCGCGGCGAGAGCGACGCCCTCCGTAAGGCCATGGGTAAGAAGAAGAAG 11113 Query 115753 GAGATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGCTGC 115794 || ||| || | | || |||||||||| |||| ||| || Sbjct 11112 GACATCGTCGATGCCATGAAGCCCAAGTTCATCGAGGGCGGC 11071 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 114586 GGCCCGGGCCGTGGCTCTGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 114645 || || ||||||||||| || | || |||| ||||| | |||||||||| | Sbjct 12186 GGGCCAGGCCGTGGCTCGGCAGCCGGTAGTGTGGTGGCCTACTGCCTGGGCATCACGAAG 12127 Query 114646 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 114705 ||||||||| | |||||||||||| |||||||||| || | ||||| ||||| | | Sbjct 12126 ATCGACCCGCTGAAGTACGACCTGCTGTTCGAGCGTTTCCTGAACCCCGACCGTATCTCC 12067 Query 114706 TTCCCCGACATCGACGTCGACTTC 114729 | ||||| ||||| ||||||| Sbjct 12066 CTGCCCGATATCGATACCGACTTC 12043 >seq1312 Length=3891 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 114586 GGCCCGGGCCGTGGCTCTGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 114645 || || |||||||| || || | ||||| || | ||| | |||||||||| | Sbjct 3108 GGACCTGGCCGTGGGTCGGCAGCAGGCTCCACAGTGGCATACTGCCTGGGCATCACGATG 3167 Query 114646 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 114705 | ||||| |||||||||||||| |||||||||| || ||||||||||||| | | Sbjct 3168 GTGGACCCCATCAAGTACGACCTCCTGTTCGAGCGATTCCTCAACCCGGACCGTATCTCC 3227 Query 114706 TTCCCCGACATCGACGTCGACTTC 114729 |||| || |||||||| |||||| Sbjct 3228 CTCCCGGATATCGACGTGGACTTC 3251 >seq112 Length=216842 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 114586 GGCCCGGGCCGTGGCTCTGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 114645 || || || || ||||| || | || ||| |||| |||| | | |||||||| | Sbjct 52088 GGACCCGGACGAGGCTCGGCAGCCGGTTCGGTGGTGGCCTATTGCCTCGGCATCACACAG 52029 Query 114646 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 114705 || |||||| |||||||||||||| |||||||||| || |||| || |||||| | | Sbjct 52028 ATAGACCCGCTCAAGTACGACCTGCTGTTCGAGCGGTTCCTCAATCCCGACCGCATCTCC 51969 Query 114706 TTCCCCGACATCGACGTCGACTTC 114729 | ||||| |||||| ||||||| Sbjct 51968 CTGCCCGATATCGACACCGACTTC 51945 >seq4669 Length=35002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 7/124 (6%) Strand=Plus/Plus Query 115634 TGAACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGC---ACCGCCAAGGAGC 115690 |||| |||||||||||| ||||||||||||||| | || | | | | |||| | Sbjct 8067 TGAA-ACCTACGGCATCACCGTCTACCAGGAGCAGGTCATGCTCCTGAGCCGCAAG---C 8122 Query 115691 TGGCCGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGA 115750 | ||||| ||||||| ||||||||||| || || || |||| ||| ||||||||||||| Sbjct 8123 TCGCCGGCTTCACCCGCGGCGAGGCCGACCGCCTCCGCAAGGCCATGGGCAAGAAGAAGA 8182 Query 115751 TGGA 115754 | || Sbjct 8183 TAGA 8186 Score = 82.4 bits (90), Expect = 8e-11 Identities = 110/151 (73%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 114586 GGCCCGGGCCGTGGCTCTGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 114645 ||||| ||||| || || || | || | ||| | ||| | |||| |||||| Sbjct 6976 GGCCCCGGCCGAGGTTCCGCAGCCGGAAGCGTCGTCGCTTACTGCCTGGGTATCACCAAC 7035 Query 114646 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCCG 114703 ||||||| |||||||| |||| |||||||||| || |||| || |||||| | || Sbjct 7036 CTCGACCCCCTCAAGTACAACCTCCTGTTCGAGCGTTTCCTCAATCCCGACCGCATCTCG 7095 Query 114704 ACTTCCCCGACATCGACGTCGACTTCCAGAA 114734 | | ||||| ||||||||||||||| |||| Sbjct 7096 A--TGCCCGATATCGACGTCGACTTCGAGAA 7124 >seq3449 Length=4901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 115637 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGC-ACCGCCAAGGAGCTGGCC 115695 |||||||||||||| |||||| ||||||||| |||| | | ||| | |||||||| Sbjct 3945 ACACCTACGGCATCACGGTCTATCAGGAGCAGGTGATGCTCTTGAGCCGA-CAGCTGGCC 3887 Query 115696 GGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAG 115755 | ||||||| || ||| ||| ||||| |||| || || |||||||||| ||| Sbjct 3886 GACTTCACCCGCGGTGAGAGCGACGCTCTGCGAAAGGCGATGGGTAAGAAGAAGAAGGAC 3827 Query 115756 ATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGCTGCA 115795 ||| | | | || |||| ||||| |||| ||| ||| Sbjct 3826 ATCGTAGATGCCATGAAGCCGAAGTTCATCGAGGGCGGCA 3787 >seq4303 Length=40773 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 96726 CGATGCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATC 96785 ||| ||| | |||||||| ||||||||||| ||||||||||||| ||||||||||| | Sbjct 6893 CGACGCGGAAATAGCTCAGTTGGTAGAGCGCGACCTTGCCAAGGTCGAGGTCGCGGGTCC 6952 Query 96786 GTAACCCGTTCTTCGCTC 96803 | | |||||| | ||||| Sbjct 6953 GAATCCCGTTTTCCGCTC 6970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500825676588720