Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4656 113 6e-19 seq112 102 1e-15 seq828 100 3e-15 seq3370 96.9 4e-14 seq2479 95.1 1e-13 seq3714 87.8 2e-11 >seq4656 Length=58406 Score = 113 bits (124), Expect = 6e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 92594 GATGCACTCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACAT 92653 |||||| ||| |||||| ||||||| |||||| ||||||| |||| || | | Sbjct 55361 GATGCAGTCGCGTATCTGGACCGTGAGGCGCTCCTGGACCTGGAGGCGGCGGGCGTAGGT 55420 Query 92654 GTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCAC 92713 ||||| | ||| | ||| |||||||||||| |||| |||| |||| | ||| | || Sbjct 55421 CTCGACTACGCGGGCGATTTTGCTCAGGCCGGTGATTTTGCCGTTGGGGATATAGGCTAC 55480 Query 92714 GTGGGCCTTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTC 92773 |||| |||||| || ||||||| || |||||| ||||| || | | | || | ||| Sbjct 55481 GTGGCACTTGCCGATGAAGGGCATCATATGGTGTTCGCAGGTGCTGTAGAGTTCTATGTC 55540 Query 92774 GCGCACGATCACCAT 92788 |||||| | ||||| Sbjct 55541 GCGCACCAGGACCAT 55555 >seq112 Length=216842 Score = 102 bits (112), Expect = 1e-15 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 92594 GATGCACTCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACAT 92653 |||||| || | ||||| |||| | | ||||||||||||| ||||| | || || Sbjct 57967 GATGCAGTCCACTATCTGTTGCGTCATGCGTTCCTGCACCTGGAGGCGGTGGCTGAATAT 58026 Query 92654 GTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCAC 92713 || |||| ||| | || |||||| || || | ||| |||| |||| | ||| |||| Sbjct 58027 ATCCACGACGCGAGCGACCTTGCTTAGCCCTGTAATCTGGCCCTTGGGGATGTACGCCAC 58086 Query 92714 GTGGGCCTTGCCCATA-AAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGT 92772 | || ||| ||| || ||||| ||||| || || ||||| | ||||| ||||||| || Sbjct 58087 AT-GGACTTTCCCGTAGAAGGGGAGCAGGTGATGTTCGCAGAGTGAGAAGAAGTCGATGT 58145 Query 92773 CGCGCACGATCACCATCT 92790 | ||||| ||||||| Sbjct 58146 CCTTTACGATGACCATCT 58163 >seq828 Length=6688 Score = 100 bits (110), Expect = 3e-15 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 92624 CTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGATGCGCGGGATCTTGCTCAGGCC 92683 |||||||||||||| ||| || | | | ||||| | || | |||||| || || Sbjct 6233 CTCCTGCACCTGGAGACGGCGGGCATAGGTCTCGACCACACGGGCAATCTTGGAAAGACC 6292 Query 92684 GATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCCTTGCCCATAAAGGGCAGCAGATG 92743 | | |||| ||| ||| | ||| |||||||||||||||| || || |||| || ||| Sbjct 6293 GGTTATCCGGCCGTCGGGAATGTATGCCACGTGGGCCTTGCCGATGAACGGCATCATATG 6352 Query 92744 GTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCAT 92788 ||||||||||||||||||| || | ||| ||| | |||||| Sbjct 6353 ATGCTCGCACATGGAGAAAAGCTCTATGTCCTTCACCACCACCAT 6397 >seq3370 Length=7693 Score = 96.9 bits (106), Expect = 4e-14 Identities = 226/336 (67%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 92593 CGATGCACTCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACA 92652 |||| |||||| ||||| | || || ||||||||| || | || | | || | Sbjct 4101 CGATACACTCGCGTATCTGCTGTGTCAGTCGCTCCTGCACTTGCAGCCGATGGCTGAAGA 4160 Query 92653 TGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCA 92712 |||| || | || | ||||||||||| || |||| || |||| | || ||| Sbjct 4161 TGTCCACCACACGGGCTATCTTGCTCAGCCCCGTGATATATCCGTTGGGGATATATGCCA 4220 Query 92713 CGTGGGCCTTGCCCATA-AAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACG 92771 | || |||||| ||||| ||||| | || || ||||| ||||| ||||| ||||||| | Sbjct 4221 CATGAGCCTTG-CCATAGAAGGGTATCATGTGATGCTCACACATCGAGAAGAAGTCGATG 4279 Query 92772 TCGCGCACGATCACCATCTCGCCCGAGGCCTCGGCAAAGAGCGCGTCGCCGATGGCCTCG 92831 || ||| |||||||||| || | ||| | |||||||| ||| | ||| Sbjct 4280 TCTTTCACAATCACCATCTGGCTGTACTTCTCTTCGAAGAGCGCATCGGTCAGCACCT-T 4338 Query 92832 GCCAGCGTCATGCG-GTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATCGG 92890 || || |||| || || | || | | ||||||||| ||||| ||||| || Sbjct 4339 ATGTGCATCCTGCGTGTACCCTCTGGTCAGTATCTGCATGGCCTTCGCCACACGCATGGG 4398 Query 92891 CGTGTCCAGGAGGCCCTCGCGCCGCACGTCCTCGCC 92926 ||| | || || ||||||||| ||||||||| Sbjct 4399 CGTCTTGAGCAGACCCTCGCGCTCGGGGTCCTCGCC 4434 >seq2479 Length=14765 Score = 95.1 bits (104), Expect = 1e-13 Identities = 196/287 (68%), Gaps = 10/287 (3%) Strand=Plus/Plus Query 1632431 TGGGCGCGCCAGGGCGTGCTTCTGCTCAACACGTGCCTCACGGTCGAGGCCGGACATCCG 1632490 ||||| |||||||| ||||| ||||| |||| |||||| || |||||||| | || Sbjct 5089 TGGGCCCGCCAGGGGGTGCTGCTGCTTAACAGCATCCTCACCGTAGAGGCCGGGAAGGCG 5148 Query 1632491 GGGTCGCACCGCGACCGCGGCTGGGAGCCCTTTACCGACGCGGTGATCTCGCTCGTGAGC 1632550 | || ||||| || ||||||| || || ||||| ||||| ||| ||| | || Sbjct 5149 GCTTCCCACCGGAACATCGGCTGGCAGGAATTCACCGATGCGGTCATC-CGCACCCT-GC 5206 Query 1632551 AGG--CGCTCGACGCACCCGGTGGTCTTTATGCTCTGGGGCCGCGACGCCCAGAGCAAGC 1632608 ||| || ||| | |||||| || |||| |||||| |||| || |||| Sbjct 5207 AGGACCGTTCGG---AAGGGGTGGTTTTCCTGCTGTGGGGCAATTTCGCCAAGGCCAAGG 5263 Query 1632609 GCAAGTTGATCGACCAGAACCGGCACAAGATCCTCGAGGCCGCCCACCCGTCGCCCAAGT 1632668 | | ||| | | | ||||||| | |||| ||| ||||| ||||| ||| | Sbjct 5264 CTTCGCTCATCAATCCCACCCGGCACCATGTCCTGCTGGCGGCCCATCCGTCCCCCCTGG 5323 Query 1632669 CGGCCACCAGCGGCTTTTTCGGCTGCCGCCACTTTTCGCAGGCCAAC 1632715 ||| | ||| ||||||||||||||| || ||||| || ||||| Sbjct 5324 CGGGCG---GCGCCTTTTTCGGCTGCCGGCATTTTTCCAAGACCAAC 5367 >seq3714 Length=60488 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 92585 CGCCTCGCCGATGCACTCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTC 92644 ||||||| |||| || |||||| |||||| ||||||||||| | ||| Sbjct 28520 CGCCTCGTTGATGGCTTCCTTGATCTGTGTGGTGAGGCGTTCCTGCACCTGCAGACGGCG 28461 Query 92645 GGAAAACATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAG 92704 || | | | || || | | || |||||||||| |||| |||| || |||| | Sbjct 28460 GGCATAGACCTCCACCACCCTCGCTATCTTGCTCAAGCCGGTGATGTAACCGTTGGGGAT 28401 Query 92705 GTAGCCCACGTGGGCCTTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAA 92764 ||| |||| || ||||| || ||||| || | || ||||||||||||||| ||||| | Sbjct 28400 GTACGCCACATGTGCCTTCCCGATAAACGGAATCATATGGTGCTCGCACATAGAGAATAG 28341 Query 92765 GTCGACGTCGCGCACGATCACCATCT 92790 || | ||| || |||||||||| Sbjct 28340 CTCTATGTCCTTGACAATCACCATCT 28315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106720752181383