Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4656 102 1e-15 seq3714 102 1e-15 seq828 95.1 2e-13 >seq4656 Length=58406 Score = 102 bits (112), Expect = 1e-15 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 118700 GATGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCAT 118759 ||||| ||| |||||| |||||| |||||| ||||||| |||| || | | | Sbjct 55361 GATGCAGTCGCGTATCTGGACCGTGAGGCGCTCCTGGACCTGGAGGCGG--CGGGCGTAG 55418 Query 118760 GTC--GACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCC 118817 ||| ||| | ||| | ||| |||||||||||| |||| |||| ||| | ||| | Sbjct 55419 GTCTCGACTACGCGGGCGATTTTGCTCAGGCCGGTGATTTTGCCGTTGGGGATATAGGCT 55478 Query 118818 ACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATG 118877 ||||| ||||||||| ||||||| || |||||| ||||| || | | | || ||| Sbjct 55479 ACGTGGCACTTGCCGATGAAGGGCATCATATGGTGTTCGCAGGTGCTGTAGAGTTCTATG 55538 Query 118878 TCGCGCACGGTCACCATCTCGCCCG-ACGTCTCGGCAAAGAGGGCGTCGCCGA 118929 |||||||| ||||| | || | || ||||| | |||| ||| | || || Sbjct 55539 TCGCGCACCAGGACCAT-TTGCTGGTACTTCTCGTCGAAGATGGCCTGGCGGA 55590 >seq3714 Length=60488 Score = 102 bits (112), Expect = 1e-15 Identities = 189/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 118624 GCACGCCGCGCATGCACACGCACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCG 118683 |||||||||||||||||| || | |||| | |||||| |||||| |||| || || Sbjct 28587 GCACGCCGCGCATGCACATACAGAGGTGGCGCGCCTCGATGACGACGGCGACACCTAACG 28528 Query 118684 CGCCCGTGACCTCGCTGATGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGA 118743 | ||||| ||||| || |||||| ||||| ||||||||||| | Sbjct 28527 GATGCAACGCCTCGTTGATGGCTTCCTTGATCTGTGTGGTGAGGCGTTCCTGCACCTGCA 28468 Query 118744 A---GCGGTCCGAGAGCATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGC 118800 |||| | ||| | || || | | || |||||||||| |||| |||| | Sbjct 28467 GACGGCGGGCATAGACC---TCCACCACCCTCGCTATCTTGCTCAAGCCGGTGATGTAAC 28411 Query 118801 CCGCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACA 118860 | ||| | ||| |||| || ||||| |||||||| || | || |||||||||||||| Sbjct 28410 CGTTGGGGATGTACGCCACATGTGCCTTCCCGATAAACGGAATCATATGGTGCTCGCACA 28351 Query 118861 TGGAGAAAAAGTCAATGTCGCGCACGGTCACCATCT 118896 | ||||| | || ||||| || ||||||||| Sbjct 28350 TAGAGAATAGCTCTATGTCCTTGACAATCACCATCT 28315 >seq828 Length=6688 Score = 95.1 bits (104), Expect = 2e-13 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 118730 CTCCTGCACCTGGAAGCGGTCCG-AGAGCATGTCGACGATGCGCGGGATCTTGCTCAGGC 118788 |||||||||||||| ||| | | || | ||||| | || | |||||| || | Sbjct 6233 CTCCTGCACCTGGAGACGGCGGGCATAGG-TCTCGACCACACGGGCAATCTTGGAAAGAC 6291 Query 118789 CGATGATCCTGCCCGCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGAT 118848 || | |||| ||| |||| | ||| ||||||| ||||||||||| || |||| || || Sbjct 6292 CGGTTATCCGGCCGTCGGGAATGTATGCCACGTGGGCCTTGCCGATGAACGGCATCATAT 6351 Query 118849 GGTGCTCGCACATGGAGAAAAAGTCAATGTC 118879 | ||||||||||||||||||| || ||||| Sbjct 6352 GATGCTCGCACATGGAGAAAAGCTCTATGTC 6382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915703996113461