Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_023007.1 Length=168876 Score E Sequences producing significant alignments: (Bits) Value seq2193 118 1e-21 >seq2193 Length=6040 Score = 118 bits (130), Expect = 1e-21 Identities = 203/292 (70%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 61697 GGTAAGATTCTGAACTGTCTGAAAGCACCATATGATAGAATTTTCAGTAATGATATTATC 61756 || ||||| |||||||| || ||| | || |||| ||||||| | |||||||||| Sbjct 1992 GGCAAGATACTGAACTGCCTTAAATCCGATTACGATAAGATTTTCAAGAGTGATATTATC 1933 Query 61757 GTAGATTTAATTAAGATTCTAGGTTGTGGTGTGGAAGTCAAGAATAAACATGCAAAAGAT 61816 |||||||||||| | || || || || || || || |||| || ||| || || Sbjct 1932 ACGGATTTAATTAAGGTACTTGGCTGCGGGGTTGAGGTTAAGAGCAAGGCTGCTAAGGAC 1873 Query 61817 TTAAATACTTTCGACATTGAGAAATTAAAATGGTCAAAAGTAATCATTGCAACTGATGCA 61876 || | || || || || | ||| ||| |||| ||| || ||||| Sbjct 1872 GTATCTTTGTTTGATATGGACGCTCTGCGTTGGAATAAAATAATGATTTGTACGGATGCC 1813 Query 61877 GACGTTGACGGATTTCACATTCGAACACTTATCTTAACTATGATTTACCGTCTAATGCCT 61936 ||||||||||| || || || | || ||||| | ||||||||||||||||| ||||| Sbjct 1812 GACGTTGACGGCTTCCAGATCAGGACTCTTATTCTCACTATGATTTACCGTCTTATGCC- 1754 Query 61937 ACGT-TAATTGAAGAAGGATATATCTACATAGCTGAATCACCATTATATGAA 61987 ||| | || ||||| ||| | | || || || |||||||| || |||||| Sbjct 1753 GCGTCTTATCGAAGAGGGAAAAGTGTATATTGCCGAATCACCTTTGTATGAA 1702 Score = 96.9 bits (106), Expect = 4e-15 Identities = 277/414 (67%), Gaps = 9/414 (2%) Strand=Plus/Minus Query 62399 GTAATTTTAGACCGAGCATTACCAGAGATTGATGGATTTAAACCTTCACAAAGACGTATT 62458 |||||| | ||| ||| | || |||||||| || ||||| || || || ||| | Sbjct 1246 GTAATTCTCTCCCGTGCAATTCCCGAGATTGACGGCTTTAAGCCCTCGCACAGAAAGCTC 1187 Query 62459 CTTGAGACTGCTAGACGA-ATGGGGTTGTTGAATGGAGCACGTAAGAAGT-CACAAGGGA 62516 ||| | ||| | || | |||||| | || | || | | || ||| | ||| | Sbjct 1186 CTTTACACTA-TGTACAATATGGGGCTTTTACAGGGCGGAACTATTAAGAGCGCAAAC-A 1129 Query 62517 TTGTAGGACAAACAATGTTTCTACATCCTCATGGTGACGGTGCAATCTATGAAACTCTAG 62576 | || || | |||||| || | ||||| || |||| | || ||||||||| | Sbjct 1128 TAGTTGGTCGTACAATGCAGCTCAACCCTCACGGCGACGCGTCTATTTATGAAACTATGA 1069 Query 62577 TACGTATGGCTAGGGATGCAGAA-GCCTTATCGTATCCGTTAATTGATTCTAAAGGTAAC 62635 | ||| | | |||| | ||| | ||| | ||||||| | || ||| || ||| Sbjct 1068 TTCGTCTTTCAAGGGGTAATGAAAGTCTTTTA-TATCCGTATGTGGAGAGTAAGGGCAAC 1010 Query 62636 TTTGG-AAAGCAGTATTCAAAGAATATGCAGTACGCTTCTGCACGTTATACGGAAGCAAA 62694 || || ||||| ||| |||||||||||| |||||| || | |||||||| || || || Sbjct 1009 TTCGGTAAAGC-GTACTCAAAGAATATGATGTACGCGGCTTCGCGTTATACTGAGGCTAA 951 Query 62695 ACTAGAACCAATTGCAAAAGAATTGTTTAAAGACATCAATAAAAATACAGTGGATATGAT 62754 || | || ||| |||| || | ||| | || || ||||| |||| || ||| | | Sbjct 950 GCTTGCTCCGATTTCAAAGGAGCTCTTTGAGGATATTAATAAGGATACCGTTGATTTTGT 891 Query 62755 AGATAGCTATGATGGAACGTTGAAAGAACCTAAGTTTCTTCCTGTAACACTTCC 62808 ||||| |||||| ||| |||| || || | | ||||| |||||| |||| Sbjct 890 AGATAACTATGACAATACGATGAAGGAGCCGACTCTGCTTCCGGTAACA-TTCC 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540240764209440