Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq4046 95.1 4e-15 seq3223 91.5 5e-14 seq117 89.7 2e-13 seq3758 86.0 2e-12 seq2047 84.2 8e-12 seq2255 80.6 1e-10 seq33 80.6 1e-10 >seq4046 Length=72282 Score = 95.1 bits (104), Expect = 4e-15 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||||| ||||| |||| ||| |||||||| |||||||||||||||||||| || Sbjct 53851 GTTGCGGAGGCAGGATTCGAACGTGCGACCTCCAGGTTATGAGCCTGGCGAGCTACC-AA 53793 Query 50170 CTGCTCTACTCCGC 50183 |||||| ||||||| Sbjct 53792 CTGCTCCACTCCGC 53779 >seq3223 Length=8505 Score = 91.5 bits (100), Expect = 5e-14 Identities = 69/79 (87%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 50106 TCTG-GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTA 50164 |||| ||||||||||| ||| | |||| ||| |||||||| |||||||||||||||||| Sbjct 1898 TCTGAGTTGCGGAGGCAGGACTCGAACATGCGACCTCCAGGTTATGAGCCTGGCGAGCTA 1839 Query 50165 CCGAACTGCTCTACTCCGC 50183 || |||||||| ||||||| Sbjct 1838 CC-AACTGCTCCACTCCGC 1821 >seq117 Length=110634 Score = 89.7 bits (98), Expect = 2e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||||| ||| | |||| ||| |||||||| |||||||||||||||||||| || Sbjct 25462 GTTGCGGAGGCAGGACTCGAACATGCGACCTCCAGGTTATGAGCCTGGCGAGCTACC-AA 25404 Query 50170 CTGCTCTACTCCGC 50183 |||||| ||||||| Sbjct 25403 CTGCTCCACTCCGC 25390 >seq3758 Length=78605 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||||| || | |||| ||| |||||||| |||||||||||||||||||| || Sbjct 73706 GTTGCGGAGGCTCGACTCGAACGAGCGACCTCCAGGTTATGAGCCTGGCGAGCTACC-AA 73764 Query 50170 CTGCTCTACTCCGC 50183 |||||| ||||||| Sbjct 73765 CTGCTCCACTCCGC 73778 >seq2047 Length=4804 Score = 84.2 bits (92), Expect = 8e-12 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| ||| ||| | |||| ||| |||||||| |||||||||||||||||||| Sbjct 486 TGGTTGCGGGGGCAGGACTCGAACATGCGACCTCCAGGTTATGAGCCTGGCGAGCTACC- 544 Query 50168 AACTGCTCTACTCCGC 50183 |||||||| || |||| Sbjct 545 AACTGCTCCACCCCGC 560 >seq2255 Length=3589 Score = 80.6 bits (88), Expect = 1e-10 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 |||||||||||| ||| | ||||| || ||||| || |||||||| | ||||||||| Sbjct 800 TGGTTGCGGAGGTAGGACTCGAACCTACGACCTCCGGGTTATGAGCCCGACGAGCTACC- 742 Query 50168 AACTGCTCTACTCCGC 50183 |||||||||||||||| Sbjct 741 AACTGCTCTACTCCGC 726 >seq33 Length=27562 Score = 80.6 bits (88), Expect = 1e-10 Identities = 63/74 (85%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||||| || | |||| || |||||||| |||||||||||||||||||| || Sbjct 23638 GTTGCGGAGGCTCGACTCGAACGAACGACCTCCAGGTTATGAGCCTGGCGAGCTACC-AA 23696 Query 50170 CTGCTCTACTCCGC 50183 |||||| ||||||| Sbjct 23697 CTGCTCCACTCCGC 23710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181592203812738