Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq2648 102 9e-17 seq2701 98.7 1e-15 seq2097 87.8 2e-12 seq152 84.2 2e-11 seq124 84.2 2e-11 >seq2648 Length=7900 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 ||||||||| |||||||||||||| | |||||| || ||||||||| || |||||||||| Sbjct 2969 TGGTGCCGGCTAACGGATTCGAACTGATGACCCACTGATTACAAATCAGTTGCTCTACCA 2910 Query 72164 ACTGAGCTAAACCGGC 72179 |||||||||| ||||| Sbjct 2909 ACTGAGCTAAGCCGGC 2894 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 ||||||||| |||||||||||||| | ||||| || ||||||||| ||||||||||||| Sbjct 3134 TGGTGCCGGCTAACGGATTCGAACTGATGACCAACTGATTACAAATCAGCTGCTCTACCA 3075 Query 72164 ACTGAGCTAAACCGGC 72179 |||||||||| ||||| Sbjct 3074 ACTGAGCTAAGCCGGC 3059 >seq2701 Length=6067 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 61350 AGTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACGAAC 61409 ||||||||| | || | ||| || |||| || ||| |||| || || ||||| || Sbjct 5354 AGTGAAAGTTCTTGTTACAACATCCTGCTGCTGTTCTTTGGTTAAAGAGTTGAAACGTAC 5295 Query 61410 GGCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATC 61469 ||||| || |||||||| || ||||| |||||||||||| || |||| | |||||| Sbjct 5294 AGCATAACCTGAAACACGGATTGTCAGTGTAGGATATTTTTCAGGGTGTTCCATTGCATC 5235 Query 61470 TTCTAAAGTTTCTTTAGACAGCACGTTCACGTTCAAATGCTGTCCACCTTCAAC---TTT 61526 | |||||| | || |||||||| |||| |||||| || ||||| || | Sbjct 5234 GAGCAGTGTTTCTCTGTTGAGAACGTTCACATTCAGATGCTGACCGCCTTCTACATAGTG 5175 Query 61527 AACTGTAGGCTTGGTTTC 61544 | |||| ||||||||| Sbjct 5174 ATCTGTGTTCTTGGTTTC 5157 >seq2097 Length=18359 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 ||| || ||| |||||| ||||||| |||||| || ||||||||| ||||||||||||| Sbjct 2795 TGGAGCTGGTGAACGGACTCGAACCCCTGACCTGCTGATTACAAATCAGCTGCTCTACCA 2736 Query 72164 ACTGAGCTAAACCGGC 72179 ||||||||| ||| || Sbjct 2735 ACTGAGCTACACCAGC 2720 >seq152 Length=50040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 |||||||||||| |||| |||| | ||||| | |||||| |||| | |||||||||| Sbjct 8604 TGGTGCCGGTTAGGAGATTTGAACGCCCGACCCACGCATTACGAATGCGTTGCTCTACCA 8545 Query 72164 ACTGAGCTAAACCGGC 72179 |||||||||||||||| Sbjct 8544 ACTGAGCTAAACCGGC 8529 >seq124 Length=48292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/99 (81%), Gaps = 5/99 (5%) Strand=Plus/Plus Query 77423 TGCTCTACCAACTGAGCTATATTCCC--TGAATTTGGTGGGGA--GTGATGGAGTCGAAC 77478 ||||||| |||||||||||| | | | || |||||| || |||||||| |||||| Sbjct 46879 TGCTCTATCAACTGAGCTATTTCCGCATTGTTCTTGGTGTGGGTGGTGATGGATTCGAAC 46938 Query 77479 CACCCGAGTCGCAATGACAACAGATTTACAGTCTGCACC 77517 |||| ||||| || ||||||||||||||||||||| || Sbjct 46939 CACCGAAGTCGAAA-GACAACAGATTTACAGTCTGCCCC 46976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554319866785440