Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_023571.1 Length=46243 Score E Sequences producing significant alignments: (Bits) Value seq1940 95.1 4e-15 seq3873 91.5 4e-14 seq1730 86.0 2e-12 >seq1940 Length=58460 Score = 95.1 bits (104), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 40076 TTGAAGGTTTCTCTCGGAGTCAATTTTCTTATTCTTTCATCTTTTGTCCTGATTAATGGA 40135 || ||| |||| | |||| ||||||||| || | ||| || || || | || Sbjct 18433 TTCAAGCATTCTTTTGGAGACAATTTTCTAATCC---CATAATTAGTGAGAATGAGGGGT 18377 Query 40136 ACATTATGTCCGCCTGTACCCATATTGGCCGTCAAAGTAGGGACTACGCCACTTTTGTTT 40195 |||||||| || || || |||||||| || || ||||| || || |||||| ||| Sbjct 18376 ACATTATGCCCTCCAGTTCCCATATTTGCGGTTAAAGTTGGACAAACATTACTTTTATTT 18317 Query 40196 TCTCTAACATATTGTCTCCGCCACTGATAAATACTATC 40233 ||||||||||||||||| ||||||||||| || |||| Sbjct 18316 TCTCTAACATATTGTCTACGCCACTGATATATTGTATC 18279 Score = 80.6 bits (88), Expect = 8e-11 Identities = 144/207 (70%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 40508 ATAACTTTGAAGGTATTTCCATGATCGTGTGTTACCAGATTTTTAACGTTCTCCaaaaaa 40567 ||||| | || || |||||| ||| || || |||||||| || || || | | || Sbjct 18004 ATAACCTCAAATGTTTTTCCACCATCATGAGTGTATAGATTTTTTACATTTTCAAGATAA 17945 Query 40568 aCAACTTCCGGCTGTTTTGCTTTTATAATTCTTAATG-CTTCGAAAAACAAACTGCCTCT 40626 ||| ||| ||| | |||| ||| || | ||| | | || |||||||| | ||||| Sbjct 17944 ACAGCTTTCGG-TCTTTTTCTTCTAATAATCTCAGCAACATCAAAAAACAATGTACCTCT 17886 Query 40627 TTCGTCTTCCAAACCTTTTCTATATCCTGCAATTGAAAAAGGTTGGCAGGGGAACCCCGC 40686 ||||| || ||||||||||| ||||| || ||||| | ||||| ||||| || || Sbjct 17885 GGTATCTTCAAATCCTTTTCTATAACCTGCTATAGAAAAGGCCTGGCATGGGAAGCCAGC 17826 Query 40687 TATAACAACATC---TCCGTCGGGAAT 40710 || ||||| ||||| ||| || Sbjct 17825 ACAAAGGACATCGAATCCGTTGGGTAT 17799 >seq3873 Length=73798 Score = 91.5 bits (100), Expect = 4e-14 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 1 GCGGACGTGGCGGAATTGGCAGACGCGCAGGATTAAGGATCCTGTGGTAGAAATACCGTA 60 || || ||||||||||||||||||||||||| || ||| |||||||||| |||| ||| Sbjct 20102 GCAGAAGTGGCGGAATTGGCAGACGCGCAGGCTTCAGGTGCCTGTGGTAGCAATATCGTG 20161 Query 61 TGGGTTCGACTCCCATCGCCCGCAT 85 ||||||| | ||||||| | |||| Sbjct 20162 TGGGTTCAAGTCCCATCTTCTGCAT 20186 >seq1730 Length=88350 Score = 86.0 bits (94), Expect = 2e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 8 TGGCGGAATTGGCAGACGCGCAGGATTAAGGATCCTGTGGTAGAAATACCGTATGGGTTC 67 |||||||||||||||||||||||| || ||| |||||||||| |||| ||| ||||||| Sbjct 48673 TGGCGGAATTGGCAGACGCGCAGGCTTCAGGTGCCTGTGGTAGCAATATCGTGTGGGTTC 48614 Query 68 GACTCCCATCGCCCGCA 84 | |||||| || ||| Sbjct 48613 AAGTCCCATTTCCTGCA 48597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147847047226790