Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2640 109 4e-18 seq3881 104 2e-16 seq2595 104 2e-16 seq4549 100 2e-15 seq145 98.7 7e-15 seq1740 87.8 1e-11 >seq2640 Length=8223 Score = 109 bits (120), Expect = 4e-18 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 282340 AAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACC 282399 || ||| || ||||||||||| || || ||||| || || || | ||||| |||||| Sbjct 6800 AACACCGTAGGCAAAAGCAGCTGCTGTAGGTTCGTTGATGATACGTTTAACATCAAGACC 6859 Query 282400 AGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 282459 ||||||||| || ||||| || || || || | || | |||||| || |||||||| || Sbjct 6860 AGCAATTCTACCGGCATCCTTGGTAGCCTGACGCTGAGCATCGTTGAAGTATGCAGGTAC 6919 Query 282460 AGTAATAACGGCATCTGTTACTTCTTTTC 282488 |||||||| || ||||| || |||||| Sbjct 6920 GGTAATAACTGCTTCTGTAAC--CTTTTC 6946 >seq3881 Length=49372 Score = 104 bits (114), Expect = 2e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 |||||||||||||| |||| || ||||| || || ||||| || || | | |||| | Sbjct 6478 TTATCAAGACCATATGCAAGGGCTGCAGCTGTAGGCTCATTGATGATACGCTTTACATCA 6537 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||| || ||| | |||||||| || || || || | || | ||||||||| || || Sbjct 6538 AGACCTGCGATTTTACCTGCATCCTTTGTAGCCTGACGCTGAGCATCGTTAAAGTAAGCC 6597 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488 || || |||||||| || ||||| || |||||| Sbjct 6598 GGTACCGTAATAACTGCTTCTGTAAC--CTTTTC 6629 >seq2595 Length=21368 Score = 104 bits (114), Expect = 2e-16 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 637120 ATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGA 637179 ||| |||| |||||||||||||| ||| |||| || |||||| || ||| || | Sbjct 6481 ATTGTTGTGGATTATTCTTCTCCGAATGTTGCAAAGGAAATGGCGGTTCATCATATACGT 6422 Query 637180 TCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTAT 637239 |||||| | || ||||| ||| || || || | ||| | |||| || | ||| | Sbjct 6421 TCAACTGTAATCGGTGATTCTGTTGTCAGAGTGCTTGAATTTCTTGGAAACAAGGTTATT 6362 Query 637240 CGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATATTAAA 637299 ||| || ||| | ||||||||||||||||| ||||| ||| | ||||| ||| || || Sbjct 6361 CGTGCCAACCATATAGGTGATTGGGGAACTCAGTTCGGAATGCTTATTGCGTATCTTGAA 6302 Query 637300 AA 637301 || Sbjct 6301 AA 6300 >seq4549 Length=53065 Score = 100 bits (110), Expect = 2e-15 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 || |||||| | || || |||| ||||| || || ||||| || |||||||||||||| Sbjct 44781 GTCTTTATCTAAGCCGTAAGCAAGCGCAGCCGCCGTCGGTTCGTTGATAATTCTCAAAAC 44722 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 | ||| || |||||| | || || ||||| || ||||| | ||| || ||||| || Sbjct 44721 TTCAAGCCCTGCAATTTTGCCCGCGTCTTTTGTTGCTTGACGTTGACTGTCATTAAAGTA 44662 Query 282451 TGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498 || |||||||| ||||| || | ||||| || || | |||||| Sbjct 44661 AGCCGGAACAGTGATAACCGCTTGAGTTACAGTTTCGCCCAAATAAGC 44614 Score = 87.8 bits (96), Expect = 1e-11 Identities = 194/289 (67%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||||| |||||| || ||||| | ||| || || ||||||||||| || || Sbjct 45677 GCAGAAACATTAACAATACCGTTAGCATCAATATCGAAAGTAACTTCAATTTGCGGAACT 45618 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATT--AAATGTTCCCAGATTATTATTATCTT 281543 || | | | ||||| || || || ||| | ||| ||| ||| | |||||| | Sbjct 45617 CCACGCGGCGCAGGCGGAATATCT--GAAAGTACAAAACGTCCGAGAGTTTTATTACCGG 45560 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | | || || |||||||| |||| || || ||| | |||||| || | Sbjct 45559 CTGCCATTTCTCTTTCACCCTGCAAAACGTGAATTTCAACGCTTGATTGATTGTCAGCCG 45500 Query 281604 AAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 ||||| ||| ||| ||||||| | |||||| ||||| || | |||||||| || | Sbjct 45499 CAGTTGAAAAGACTTGTGATTTTTGAGTAGGAATGGTTGTATTGCGTTCAATAATTTTTG 45440 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 281712 | || || || ||||| | ||| || ||||| || || || || Sbjct 45439 TGCAAACGCCGCCCAAAGTTTCAATACCGAGTGAAAGTGGTGTAACGTC 45391 >seq145 Length=97958 Score = 98.7 bits (108), Expect = 7e-15 Identities = 246/370 (66%), Gaps = 14/370 (4%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | |||||| || ||||||||||| || | || | | ||||||| Sbjct 33285 ATACCGTTGGCATCAATATCAAAAGTTACTTCAATTTGCGGCATACCGCGCGGAGCAGGA 33344 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || || ||| |||||| |||| ||| | | || |||| | | | || || ||| Sbjct 33345 GGAATACCTACCAAATCAAATTGTCCTAAAAGCTTGTTATGTGCGGCAATTTCACGCTCA 33404 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || | ||| | | ||||||||| | ||||| ||| ||| | ||||| ||| Sbjct 33405 CCTTGGAATACGCGAATAGTAACTGCGGTTTGTCCGTCTTCGGCAGTGGAGAATAC-CTG 33463 Query 281621 GAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 | ||| | ||||| || || || | |||||||| || | | |||||| Sbjct 33464 ACTCTTTCTGGTCGGAATCGTAGTATTACGATCAATAAGGCGAGTAAACACACCACCTAA 33523 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 |||||| | ||| || || || || || ||||| | || | || || || || | Sbjct 33524 TGTTTCAATACCGAGGGACAGCGGTGTAACATCCAAAAGAAGAACATCTTTAA------C 33577 Query 281740 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 281799 ||| | ||| ||| || | | | ||||| || |||||| |||||| ||||||| Sbjct 33578 ATC-----GCCCATCAA-AACACCACCCTGAATTGCGGCACCAACGGCAACAACTTCATC 33631 Query 281800 AGGATTAACA 281809 ||| |||||| Sbjct 33632 AGGGTTAACA 33641 >seq1740 Length=34420 Score = 87.8 bits (96), Expect = 1e-11 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || ||||||||||| |||| ||| || || || || || || || || | | |||| | Sbjct 5766 TTGTCAAGACCATATGCAAGAGCTGCTGCTGTAGGCTCGTTGATGATACGCTTTACATCA 5825 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || || || | || |||||||| || || || | |||| ||| || || || ||| Sbjct 5826 AGTCCTGCGATCTTGCCGGCATCTTTTGTAGCCTGACGCTGTGCATCATTGAAGTAAGCA 5885 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTT 282485 || ||||| ||||| || ||||| |||| || Sbjct 5886 GGTACAGTGATAACAGCCTCTGTAACTTTTT 5916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740380060648374