Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq2964 311 1e-79 >seq2964 Length=2227 Score = 311 bits (344), Expect = 1e-79 Identities = 797/1193 (67%), Gaps = 24/1193 (2%) Strand=Plus/Plus Query 27886 TCATGCATACCGATGTAACCGATACTAACAGATGCGCGACCGTTGTC-AAATGCTTTCAT 27944 ||||| |||||||| ||||| | | || || || || ||||| | ||| ||| || Sbjct 714 TCATGAATACCGATATAACCCAGAGATACGGACGCACGCCCGTTCTTGAAAATCTTGGAT 773 Query 27945 GATATCGTCATCTGGGTTCAGACGAACACCACAAGCACCTTCAACGTAAAGAATCGGAGC 28004 ||||| || || | || || || ||||| || ||||| || | ||| || ||||| || Sbjct 774 -ATATCCTCGTCAGCCTTAAGGCGGACACCGCAGGCACCCTCCATGTAGAGGATCGGGGC 832 Query 28005 GACGCTGGCTTTAACGCCACGCAGACGATCAACGCGAGCCATCAAAGCTTGCTTGGTGAT 28064 || | || || || || |||||| ||| || || || || | |||| ||| Sbjct 833 CACACGTGCCTTCACACCGTCCAGACGGGCAATACGGCACAGCAGCGCCTTCTTGCAGAT 892 Query 28065 TTCCATACGTTCTTCCAGAAGATCCCAGAAACGCATAGGATTGCCATTTGAATCAAGAGC 28124 | || |||||| | || | | |||| | || || || | |||| || Sbjct 893 GTTCAGACGTTCACCGAGGATCTTGTAGAATTTGGTCTCATCCCCCTTGGCCTCAATGGC 952 Query 28125 GATTCGCGGCAAGTTCAGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAACTTCAAC 28184 ||| || |||| |||||| | |||||||||| ||||||||||| || || | | ||| Sbjct 953 GATACGAGGCAGATTCAGACTTACCACACCCAGATTGTTACGGCCGTCGTGGATCTGAAC 1012 Query 28185 ACCGTTTTCGTCTTCCCAGCGATGCAAGAAACTA-CGGCATCCCATTGGGAATTTGAAAC 28243 |||||| || || | | | || || || | ||||| ||||| || ||||| Sbjct 1013 ACCGTTCTCCTCATACGGG----GCGAGGAATGAGCGGCAGCCCATCGGAGTCTTGAATG 1068 Query 28244 TACCAGTCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTCGCAG 28303 ||| || || | || | || ||| ||| ||||||| ||||||||||| | || | | Sbjct 1069 AACCGGTAACCTTCACAACCTGATCGTAGTTCAGAATATCCGGATACATTCTCTTGGAGG 1128 Query 28304 CGCATTCCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGGTTCAAGTTGTGTC 28363 ||||||| ||||||| || |||||| || |||||| | || ||| ||| Sbjct 1129 CGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTAGGATCACCCTCTTTACGGTTCAGTC 1188 Query 28364 CGTCTTTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCAAGAC 28423 | || || | || || ||||| || |||||||| | || | | || |||| Sbjct 1189 CCTCCTTGATGGCAAACACCAGCTTAGGGAAAACCGCAGTTCTGTGATTGCGGCCGAGAC 1248 Query 28424 CAGCCAAACGAACTTTCAGGATTG-CTTCTTGAATCAGTTCTGACTCCCAGCTAGTACCA 28482 |||| | | ||||| || | ||||| || |||| |||||||||| || || Sbjct 1249 CAGCAATTCTGTTCTTCAGAATAGACTTCTGGA-TCAGACGTGACTCCCAGGATGTTCCC 1307 Query 28483 AGACCAAAGCCGA-AGGTACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGTTGAC 28541 ||||| || |||| || ||| ||||||||| ||||| || | || ||||| ||||| || Sbjct 1308 AGACCGAAACCGAGAGTTAC-GAACGGAGTCTGACCGTTGGAGGTATGCAGGGTGTTTAC 1366 Query 28542 CTCATACTCCAGACCTTGCATAGCATCATAT-ACAGCTTTGCGAGTCTTTGCAATAGCAT 28600 ||||| || ||| || | || ||||| || |||| | ||| || ||| Sbjct 1367 TTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCCTTTTC-AGTACGGGCTCGGGCAA 1425 Query 28601 ATTGCTGTT--GATCTGGAATTTTCCAGTAA-CGAGCTTCATCCAAGTGCTTTTCGTGTG 28657 | ||||| |||| ||||| | ||| | || | || || | | ||| | Sbjct 1426 A--GCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATCTTCTGA-TACTTCATGAAAC 1482 Query 28658 TCATTTTAACATACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTACCGCCATAAA 28717 || | |||||||||| || ||||| || ||| ||| ||||| || ||||||| || | Sbjct 1483 TCTTGGTAACATACGGGGCAAGCACCTCATCACAGCGGTTGATGGTTGTACCGCCGTAGA 1542 Query 28718 TGTGACTTGCTACTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTT 28777 | || || || || || |||||||| || || | || || | |||||| || | Sbjct 1543 TATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAACCGCGGTTGCGGTACTGATTGACT 1602 Query 28778 TCGGAGTCTCGATTTGAGCATTACCCATTCTGAAACCACGTTTCAACATTCCTTCAACAT 28837 | || | ||||||| ||||||||||| ||||||| |||| || |||||| | |||| Sbjct 1603 TAGGTGATTCGATTTCGGCATTACCCATCTTGAAACCGCGTTCCAGCATTCCGCCGACAT 1662 Query 28838 CTATCAACATGCAGTTAAACATTGGGAAGAACGGTGAATAATCAAGATCGTGGAAGTGAA 28897 | |||| ||| ||||| ||||| ||||||||||||||||| || |||||||| || || | Sbjct 1663 CGATCAGCATACAGTTGAACATCGGGAAGAACGGTGAATAGTCGAGATCGTGAAAATGGA 1722 Query 28898 TCCAACCATTTTCGTGTGCTTGCATAACTTC---AACAGGCAGATAATGCTTGGCGAAAT 28954 || || |||| || ||| || |||||| | | ||| | || || || | | Sbjct 1723 TCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGAGGAAGCATGTGCTGTTTTGCATAGT 1782 Query 28955 -GCTTACTAACGATACCAGCTACCAAATCGCGTTGAGTTGGAATTACCTTGGCGTCTTTG 29013 || | | ||| ||||| || | | || || || || ||||| |||||| ||| ||| Sbjct 1783 GGCGTGC-AACAATACCTGCAAGAAGGTCACGCTGGGTCGGAATAACCTTGCTGTCCTTG 1841 Query 29014 TTTGCATTTTCATTCATGATTGATTCATCAGATTGCTTCATCAGTCCCATGAT 29066 || ||||| || || | | | ||| || || | ||||||||| |||| Sbjct 1842 TTGGCATTCTCGTTAAGCAGATCTGCATTTGACTGATCGATCAGTCCCTTGAT 1894 Score = 91.5 bits (100), Expect = 2e-13 Identities = 199/291 (68%), Gaps = 14/291 (5%) Strand=Plus/Plus Query 27373 CCGCACTTAGGACATTCATATCCTTTAGATGTAGCAGTGAA-TTCGCCGTGATAACCGCA 27431 ||||| ||||||||| | | |||||||| ||| || | || |||||| | ||||| || Sbjct 201 CCGCAGTTAGGACATACGAAACCTTTAGAGGTA-CACTCAAATTCGCCCTTGTAACCACA 259 Query 27432 TTCAAAACAAACATCAACTGGGGTATTGGTCCCATAATACGGGGTATTCCTATAAGCATA 27491 | || | |||| ||||||||||| || || ||||| || ||| || Sbjct 260 GCTGTAGCATTCGTCAATCGGGGTATTGGTACCGTAGTACGGAACCTTGTCATAGCTGTA 319 Query 27492 ATCCCAAACATCTTCGAGAGCTTTCAGATTATCTTTCATATTCGGATATTCACCGTATGA 27551 |||||| ||||| ||||| || | | ||| | | ||| || |||||||| ||||| | Sbjct 320 ATCCCACACATCCTCGAGCGCCTCGACATTGTGCTGCATGTTAGGATATTCGCCGTAGCA 379 Query 27552 AATAAAACCAC--CAGAACTAAGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCATAC 27609 |||||||| | | || || | || | | | |||| || |||||||| |||| Sbjct 380 GATAAAACCGCCGCTTGACATTGCAGGAT--AGTTCATTTCGAAGTCGATCTTCGCATAA 437 Query 27610 G----GATTTGTATTATGACGAACGTCCAGATGGAAACTGTTGGTATAATA 27656 | || ||| || | |||| |||| ||||||||||||||||| || Sbjct 438 GGGTCGACCTGT-TTCT---GAACATCCAAGTGGAAACTGTTGGTATAGTA 484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710245927814640