Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq2721 190 2e-43 seq1801 168 6e-37 seq2665 113 4e-20 seq2093 113 4e-20 seq3190 86.0 6e-12 >seq2721 Length=5566 Score = 190 bits (210), Expect = 2e-43 Identities = 520/782 (66%), Gaps = 21/782 (3%) Strand=Plus/Minus Query 26013 AAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATTGCATGAACAA 26072 |||||| ||||| ||||| |||| || | |||| | | ||| || | ||||||| Sbjct 790 AAGCAACTTCTTCTAGGCAGGCAATTTTTACACCTGTATTCAACTCCATCGACTGAACAA 731 Query 26073 ATTGAGATGCTTCCATAAGACTT--TCATGTGTTCCTGTATCCAGCCAAGTGAAACCTCT 26130 | | || |||| ||| | | ||| || || ||||| | ||||| |||||||| Sbjct 730 AATTGGAAGCTTG--TAACATTGAATCAAAAGTACCAGTATCTAACCAAGCAAAACCTCT 673 Query 26131 TCCTAGT-TTACAGACACGTAAAGTCTTTTCTTTCCAG-TACATCTCATTTATATCCGTA 26188 |||| || || ||| | || || || | ||||| || || | ||| | ||||||| Sbjct 672 ACCTAAAATTTCA-ACAT-TCAACTCATTACGTTCCAAATATATTTTATTCAAATCCGTA 615 Query 26189 ATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTATAACAGAATTA 26248 || ||||| || ||||| || ||||| || | | || | || |||| | Sbjct 614 ATTTCTAATTCACCTCTTTTTGATGGTTTTACTGTTCTCGCATACTCACAAACATGGCTG 555 Query 26249 TCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggtttttCTTCA 26308 || ||||| ||||| ||||| ||||| || | || ||| ||| |||||||||||| Sbjct 554 TCATAAAAATACAAACCTGTTATTGCATAATCAGACTTAGGTTTTTCAGGTTTTTCTTCA 495 Query 26309 ATACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGGATCATTT 26368 ||| | || || | ||||||||| ||||||||||| |||| |||||| | Sbjct 494 ATAGATAAAACCTTATTGTTTTCATCAAACTCTACAACACCAAACCTTTTCGGATCACTA 435 Query 26369 ACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTTTAGCAGAATCT 26428 |||| ||||||||| || | |||||| | || || | ||||| || Sbjct 434 ACGTTATACCCAAAAATTGTCGCTCCAATA-ACTCGAGAAGTAGCTCTTT-------TC- 384 Query 26429 AAAATGCTACCAAAACTCTGACCAAAGAATAAATTATCACCTAGCA-CAAGTGCTACAGA 26487 |||| | |||| | |||| ||| | ||||||||| || | |||| | ||| Sbjct 383 AAAAGGTGTATAAAATGCATACCATGGAAAATATTATCACCAAGGATCAAG-CATGAAGA 325 Query 26488 ATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTTTGGGCTATC 26547 |||| | |||||| | || | || | ||| || ||| | | ||| || || Sbjct 324 ATCTCCTTTAATAAAATCTTCTGCTATTAAAAAAGCATCTACGATTCCTCGCGGTTCATA 265 Query 26548 CTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTAGAAGATTTACAAA 26607 || || ||||| || | || | |||||| ||| |||||||| |||| || || ||| Sbjct 264 TTGGATGGCATAATGAAAAGACAAACCAAACTGAGATCCATCACCAAGAACATCTATAAA 205 Query 26608 ATTAATTTGATCTTCTGGTGTT-GTAATTATTAGTATTTCCCTAATTCCAGAAAGCATTA 26666 ||| ||||||| |||| | || || || || | || ||| | || || | |||||||| Sbjct 204 ATTTTTTTGATC-TCTGCTATTGGTTATGATCATAATATCCTTTATACCCGCAAGCATTA 146 Query 26667 GGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGTTTACTAA 26726 | | | | |||||||||||||| |||||||| || |||||||||| | |||| || Sbjct 145 AGGTACATATAGGATAATAAATCATTGGTTTATCATATATTGGTAATAATATTTTAGAAA 86 Query 26727 CCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATACCTTTCA 26786 | || | | || || | | ||||| ||||||||| | ||||| ||||||| Sbjct 85 TAGATAAAGAAGCCGGATACAAACGAGTTCCTGCACCACCTGCAAGTATAATTCCTTTCA 26 Query 26787 TA 26788 || Sbjct 25 TA 24 >seq1801 Length=9523 Score = 168 bits (186), Expect = 6e-37 Identities = 406/608 (67%), Gaps = 10/608 (2%) Strand=Plus/Minus Query 26186 GTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTATAACAGAA 26245 |||||||| | ||| ||||| || ||||| || | | |||| || ||| || || || Sbjct 9062 GTAATCTCCAGCTCACCTCTGGCCGAAGGCTTGATGGTCTTTGCAATCTCTACTACTGAG 9003 Query 26246 TTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggtttttCT 26305 || || || || ||||| || | | ||| || || || || || | | || || || Sbjct 9002 TTGTCATAGAAATACAATCCCGGTACTGCATAATTACTCTTAGGATTCTCAGGCTTCTCC 8943 Query 26306 TCAATACTCA---CCACTGTACCTTCAGAATCAAACTCAACAACACCAAA-TCTTTCAGG 26361 || ||| | |||| ||| || ||||||| || || ||| | ||| || || Sbjct 8942 TCGATAGAGATAGCCAC---ACCATCCTTGCCAAACTCTACTACGCCATACTCTCTCGGG 8886 Query 26362 ATCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTTTAGC 26421 ||| ||| | ||| || || || ||||||| | | || | ||| || Sbjct 8885 -TCACGTACATAATATCCGAAAATGGTAGCTCCCGGCTGACTCTCGGTGCGTTGCGCTGC 8827 Query 26422 AGAATCTAAAATGCTACCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAAGTGC 26481 ||| | || | ||| ||||||| |||| | ||||||||||| |||||||| Sbjct 8826 AGATAACAGAACCTTGGAAAATGACTGACCATAGAAAATATTATCACCTAAAACAAGTGC 8767 Query 26482 TACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTTTGG 26541 ||||| || | |||||||||| | |||| |||||||| || ||||| || || ||||| Sbjct 8766 TACAGCGTCGTTTCCAATAAAGTCCGCACCTATAATAAATGCCTCTGCCAAGCCGTTTGG 8707 Query 26542 -GCTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTAGAAGAT 26600 ||| |||| | |||||||| | || |||| | |||||||||| || | Sbjct 8706 CGCTG-CCTGAACAGCATACTGGATATCCATGCCAAGCTGACTGCCATCACCTAACAGCT 8648 Query 26601 TTACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAAA 26660 | |||| ||||| |||||| | ||| || || | || ||||| || | | Sbjct 8647 CTTCAAACACCGGAAGATCTCTTGGTGTGGAAATGATGAGCACCTCTCTAATACCTGCCA 8588 Query 26661 GCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGTT 26720 |||| || || | |||||| |||||||| || || || || ||||| | | ||||| Sbjct 8587 GCATAAGAGTCGACAATGGATAGTAAATCATCGGCTTGTCATAGATTGGCATGATTTGTT 8528 Query 26721 TACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATAC 26780 | || | | || |||| ||| ||||| ||||| || ||||||||||| ||||||| Sbjct 8527 TGCTGATTGCCTTTGTAAGTGGATAAAGTCTTGTGCCTGATCCACCTGCTAAAATAATAC 8468 Query 26781 CTTTCATA 26788 | |||||| Sbjct 8467 CCTTCATA 8460 >seq2665 Length=7310 Score = 113 bits (124), Expect = 4e-20 Identities = 228/333 (68%), Gaps = 4/333 (1%) Strand=Plus/Minus Query 26457 ATAAATTATCACCTAGCACAAGTGCTACAGAATCTTCACCAATAAAGTTCTCACCAATAA 26516 ||| |||||| || || | || || ||||||| || ||||| | ||| || || | Sbjct 3413 ATACATTATCTCCGAGAATTAGGCAAACTGAATCTTTTCCTATAAATTCCTCTCCGATGA 3354 Query 26517 TAAACGCTTCTGCTAAACCTTTTGGGCTATCCTGTATTGCATACTGTAGGGAAATACCAA 26576 ||| || | || | |||||| || ||||| |||||||| | || || || | Sbjct 3353 GAAATGCCTGCGCCAGACCTTTGGGTTCTTCCTGAATTGCATATTCTATTTTGATCCCTA 3294 Query 26577 AAGAAGAACCATCACCTAGAAGATTTACAAAATTAATT-TGATCTTCTGGTGTTGTAATT 26635 || |||||| || ||| | || | | || ||| ||||| | ||| || || ||| Sbjct 3293 AATGAGAACCGTCTTTTAGTA-ATCTTTTATATAAATGCTGATCATTTGGGGTAGTGATT 3235 Query 26636 ATTAGTATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGT 26695 | ||||| || ||||||| | || ||| || | || |||||||| ||||| ||| Sbjct 3234 ACGAGTATCTCTTTAATTCCGGCAATCATCAGAGTTGCCAGCGGATAATAGATCATGGGT 3175 Query 26696 TTATCGTAAATTGGTAATAGTTGTTTACTAACC-CCTTTAGTAACTGGGTAAAGCCTTGT 26754 || ||||| || || | | ||||||| | ||| || || |||| || || || || || Sbjct 3174 TTGTCGTATATGGGCAGCAATTGTTTATTGACCGCCGTTGTTAAC-GGATATAGTCTCGT 3116 Query 26755 TCCACTACCACCTGCTAAGATAATACCTTTCAT 26787 || ||||||||||| ||||| |||||||| Sbjct 3115 GCCTGAACCACCTGCTAGAATAATTCCTTTCAT 3083 >seq2093 Length=21051 Score = 113 bits (124), Expect = 4e-20 Identities = 237/346 (68%), Gaps = 13/346 (4%) Strand=Plus/Plus Query 26461 ATTATCACCTAGCACAAGTGCTACAG-AATCTTCACCAATAAAGTTCTCACCAATAATAA 26519 |||||| || ||||| | || ||| |||| || || ||||| | ||| |||| ||||| Sbjct 18455 ATTATCGCCGAGCACCATAGCG-CAGCAATCGTCGCCGATAAACTCCTCGCCAAGAATAA 18513 Query 26520 ACGCTTCTGCTAAACCTTTTGGGCTATCCTGTATTGCATA-CTGTAGGGAAATACCAAAA 26578 |||| | || | || | || | ||| | ||| ||| || || ||||| Sbjct 18514 ACGCCTGCGCAAGTCCGTCAGGAGAAGGCTGCACCTTATAGCTG-AGATTAACGCCAAAC 18572 Query 26579 GAAGAACCATCACCTAGAAGATTTACAAAATTAATTTGATCTTCTGGTGTTGTAATTATT 26638 | || || || ||||| | |||||||| ||| | || |||| ||| || Sbjct 18573 TGACTTCCGTCGCCGAGAAGCCTCTCAAAATTAGGCAAATCAACAGGAGTTGAAATAATA 18632 Query 26639 AGTATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTA 26698 ||||| ||||| || || | |||||| || | || |||||| | |||||||| || Sbjct 18633 AGTATGTCCCTGATACCCGCAAGCATAAGCGTACTCAGCGGATAAAATATCATAGGCTTG 18692 Query 26699 TCGTAAATTGGTAATAGTTGTTTAC---TAACCCCTTTAGTAACTGGGTAAAGCCTTGTT 26755 ||||| || ||||| || || ||| | ||| | |||| |||||||||||||| Sbjct 18693 TCGTATATAGGTAAAAGCTGCTTAGAGGTTACCATT---GTAAGCGGGTAAAGCCTTGTA 18749 Query 26756 CCACTACCACCTGCTAAGATAATACCTTTCATACTC---CTCCTTA 26798 || || || |||||||| ||||||||||||||| || ||||||| Sbjct 18750 CCGCTTCCGCCTGCTAAAATAATACCTTTCATATTCTCACTCCTTA 18795 >seq3190 Length=12615 Score = 86.0 bits (94), Expect = 6e-12 Identities = 126/177 (71%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 26617 ATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAG 26676 ||| | ||| || | ||||| ||||| || | || || || | ||| || | |||| Sbjct 4007 ATCATGTGGGGTGGAGATTATCAGTATCTCACGTATGCCTGATAACATAAGTGCCGAGAT 4066 Query 26677 TGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGTTTACTAACCCCTTTAGT 26736 || || || ||||| || ||||| | ||||||| | ||||| || || ||||| || Sbjct 4067 AGGGTAGTATATCATCGGCTTATCAAATATTGGTATCAACTGTTTGCTGACACCTTTTGT 4126 Query 26737 AACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATACCTTTCATACTCCT 26793 | ||||| || | ||| || || ||||||||||| | || ||||||||| |||| Sbjct 4127 TATCGGGTAGAGACGTGTGCCGCTTCCACCTGCTAAAACTATTCCTTTCATA-TCCT 4182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475400097254880