Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_023694.1 Length=78064 Score E Sequences producing significant alignments: (Bits) Value seq1602 428 2e-115 >seq1602 Length=30070 Score = 428 bits (474), Expect = 2e-115 Identities = 1132/1716 (66%), Gaps = 27/1716 (2%) Strand=Plus/Minus Query 15753 TCGAACACCGCAGTTCCGATTTACTACGGAAAGTTCCGTGAAGCGGTGCTCAATGGAGAG 15812 || || ||||||||||| ||| || || | || ||||| || || | | || ||| Sbjct 22071 TCTAATACCGCAGTTCCATATTATTATGGGCAATTTCGTGATGCTGTATTAAGAGGCGAG 22012 Query 15813 ATTCCGGTAAACCGAGAGATCTCTATGGAGATGAATCGCATCGACGACCTCATCGCAAAT 15872 ||||| || | |||||| |||||||| ||||| | || || || || | | || Sbjct 22011 ATTCCAGTTTGCGAAGAGATATCTATGGAAATGAACAGAATAGATTCTCTAATAGAAGAT 21952 Query 15873 GACAACATCTATTACGATGACCAGGCCGTCGAAGGATTCATTCGCTATTGCGAAAACGAG 15932 |||| ||||||||||| | || | |||||| ||| |||||||||||| ||| Sbjct 21951 CCTGACATTTATTACGATGAAGATGCAATTAAAGGATGGATTGCCTATTGCGAAAATGAG 21892 Query 15933 ATGACCCTGACTGATGGTTCAGATCTTCATCTTTTGGATTCGTTCAAACTTTGGGCCGAA 15992 ||||| || |||||||| || ||| | |||||||| ||| || ||||| ||||| ||| Sbjct 21891 ATGACGCTAACTGATGGCTCTGATTTACATCTTTTAGATAGCTTTAAACTGTGGGCAGAA 21832 Query 15993 CAGATCTTCGGTTGGTACTACTTCGTCGAACGAAGTGTCTACGAACCTTTCGAAGACAAT 16052 || || | ||| ||||| || |||| |||||| || || ||||| || ||| Sbjct 21831 CAAATATACGGATGGTATTATTTCGATGAACGATCCGTGTATGAACCAGGACCCGATAAT 21772 Query 16053 CACGGTGGGCGGTATGTCAACAAGGTTGTGAAGAAGCGACTGATCACGAAG-CAGTACCT 16111 || || |||| ||||||| || | | |||||||| | | |||| ||||| | Sbjct 21771 CATGGCGGGCATTATGTCACTAAAATGATCAAGAAGCGTTTAGTG-CGAACTCAGTATTT 21713 Query 16112 GATCGTTGCCCGAGGCGCAGCCAAGTCACTCTACGAGTCTCTTCTCCAGAGTTACTTCCT 16171 || || || |||||||| || ||||| | || || | | | || || || Sbjct 21712 AATAGTAGCACGAGGCGCTGCTAAGTCTATGTATGAAAGTTGTATACAATCATATCATCT 21653 Query 16172 CAACGTCGACACGCAGACCACTCACCAGATCACTACCTCCCCGACCATGAAACAGTCCGA 16231 || || || || ||||| |||| |||| || | || || ||| || | || Sbjct 21652 TAATGTAGATACCTCAACCACATACCAAGTCACAACAGCACCAACGATGCTGCAAGCAGA 21593 Query 16232 GGAAGTGATGGCTCCATTCCGAACTGCGATCACTCGTGCAAGAGGACCGCTGTTCGAGTT 16291 ||||| ||| ||||| ||||||| ||||| |||||||| ||||| ||| |||| || | Sbjct 21592 CGAAGTTATGTCTCCAATCCGAACAGCGATTACTCGTGCCAGAGGTCCGTTGTTTCAGAT 21533 Query 16292 CCTTACCGAGGGTTCTATGCAGAACACCACGGGTA--ATAGGTTCAATAGGCAAAAACTG 16349 | || || ||||| | || || || || |||| | || | ||| | ||| | Sbjct 21532 GTTAACTGAAGGTTCACTTCAAAATACGACCGGTAGCAAAGCT--AATCGAGTTAAATTA 21475 Query 16350 GCGTCAACCAAGAAGGGTATCGAGAACTTCTTGACTGGCTCCATTCTAGAAGTTCGCCCG 16409 || || ||||||||||||||||| ||||| || || || || | | ||| | || Sbjct 21474 GCTAGTACAAAGAAGGGTATCGAGAATTTCTTAACAGGATCAATGATTGCAGTAAGGCCA 21415 Query 16410 ATGTCCATCAACAAGCTTCAGGGTCTTCGACCCAAGGTCTCCACGGTGGACGAGTGGCTG 16469 ||| | | |||||||||| || | ||| |||||| | || || || || ||||| Sbjct 21414 ATGACAGTTGACAAGCTTCAAGGATTACGATGCAAGGTAGCTACTGTCGATGAATGGCTT 21355 Query 16470 TCCGGCGACATCCGCGAGGACGTCATCGGTGCTATCGAGCAGGGTGCATCCAAGCTTG-- 16527 || ||||| || || || || || || || ||| | ||||| ||||| | || || Sbjct 21354 TCTGGCGATATTCGAGAAGATGTAATTGGAGCTTTAGAGCAAGGTGCGGCTAAAGGTGGA 21295 Query 16528 ----ACGACTACTTGATTGTGGCTGTCAGTTCAGAGGGCACTGTTCGAAACGGCTCGGGC 16583 | ||||| || || | || ||||| || || || || ||||| ||| | || Sbjct 21294 ATGGATGACTATTTAATAATAGCCACTAGTTCTGAAGGTACAGTACGAAATGGCCCTGGA 21235 Query 16584 GACACTATCAAAATGGAACTTGCAGACATCCTTAAGGGTGAGTATTCTGCACCCCACGTC 16643 || | |||||||||| ||| || || ||||| ||||| ||| || |||||| Sbjct 21234 GATAGTATCAAAATGATGCTTATGGATATTCTTAAAGGTGAATATATCAATCCGCACGTC 21175 Query 16644 TCCATCTGGCATTACAAGTTGGACAATCTCGAAGAGGTTGCTCGACCTGAGATGTGGTTG 16703 || ||| || ||| | || || | || || || || | ||| || |||||| | Sbjct 21174 AGTATTTGGTGGTATAAGCTAGATAAATTAGATGAAGTGGCGCAACCAGATATGTGGCTT 21115 Query 16704 AAGGCAAACCCCAACCTCGGTAAGACCGTAACTTACGAAACTTACCAGTTGGATGTAGAA 16763 || || || || || |||||||||| ||| | ||||| || ||||| |||||||||||| Sbjct 21114 AAAGCCAATCCAAATATCGGTAAGACTGTATCATACGAGACATACCAATTGGATGTAGAA 21055 Query 16764 CGAGCTGAGAAAGCACCTGCATCTCGAAACGATATCTTGGCTAAGCGATTCGGAATCCCT 16823 |||| || ||||||||||| |||||| |||||||| ||||| || || || || ||| Sbjct 21054 AGAGCAGAAAAAGCACCTGCTAATCGAAATGATATCTTAGCTAAACGCTTTGGTATACCT 20995 Query 16824 ATGGAGGGTTACACCTACTTCTTCACTTACGAAGAGACGATTCCTCATC-----GTCGTC 16878 ||||| ||||| ||||||| ||||| || ||||| || | ||| |||| | || Sbjct 20994 ATGGAAGGTTATACCTACTATTTCACGTATGAAGAAAC-ACTCC-CATCGCGTAGGCGCT 20937 Query 16879 AAAGCTTCTGGCGCCAGCCTTGTGCTCTAGGCGCTGACCTTTCGCAGGGTGACGACTTCT 16938 ||| || | || ||| | | || || || | || || ||||| ||||| Sbjct 20936 TAAGTTTTAATGGATTACCATGTTCCATTGGAGCCGATTTATCACAAGGTGATGACTTTA 20877 Query 16939 GTGCGTTCACTTTCTTCTTCCCGCTTCGTAACGGGAAGTTCGGAGTCAAGACTCGCAGCT 16998 | || || || || || | || || || || || | ||||| || | | Sbjct 20876 CATCTTTTTGTTGTTTATTTCCTATGCGAGGCGACAAATTTGGCATTAAGACGCGAAATT 20817 Query 16999 ACATCACCGAACTTACGTTGATGAAGTTGCCTGGCGCTCTCCGACACAAGTACGACGAGT 17058 ||||||||||| ||| |||| || ||||| ||| | ||| || ||||| || | Sbjct 20816 ACATCACCGAAAACACGATGATTAAATTGCCAATGGCTATGCGAAGTAAATACGAGGAAT 20757 Query 17059 TCGTTGCTGAAGGCAGCTTGCACGTCATGCCCGGCACTATCTTGGAGATGATGGACGTCT 17118 | | ||||| || | || ||||| || || || | | |||||||| || | Sbjct 20756 TTACTAACGAAGGTAGTCTTATTGTTATGCCAGGTACCATTCTTAACATGATGGATGTAT 20697 Query 17119 ATGACGACCTCGACAA--TCATATCCAAGACTGCGAGTACGATGTCCGAGCTTTGGGCTT 17176 | || || | ||| | ||| | || || || ||||| || || | || || | Sbjct 20696 ACGATGATTTAGACGAGTGGATAGCTAA-AC-ATGATTACGACGTTAGATCATTTGGATA 20639 Query 17177 CGACCCGTACAACGCAAAAGAGTTCGTTGCCCGCTGGGAAGCTGAGA--ACGGACCATTC 17234 || ||||| || || |||||||| | || ||| || ||| | || || | Sbjct 20638 TGATCCGTATAATGCTCAAGAGTTCTCAGAGCGTTGG--TGCAAAGAATATGGCCCGTAT 20581 Query 17235 GGCATCGAGAAGGTTATCCAGGGTTCCAAGACCGAATCGGTTCCTCTGGGTGAGCTCAAG 17294 || | || || || || || ||| | || || ||||| |||||||| || || | ||| Sbjct 20580 GGGGTAGAAAAAGTAATTCAAGGTGCTAAAACGGAATCCGTTCCTCTAGGCGAATTAAAG 20521 Query 17295 ATTCTGAGTGAAGAGCGTTGTCTGATCTTCGACGAGAGCCTGATGTCTTTCACGATGGGT 17354 | || |||||| | | | || || || | ||| || | ||||| Sbjct 20520 AAATTGGCTGAAGATGGACTATTACTGTTTGATGAATTTATTATGCAATTTGCAATGGGC 20461 Query 17355 AACGCCATCACTCTGGAAGACACGAATGGTAACCGAAAGCTTCTCAAGAAGCGACAGGAA 17414 || ||| || | ||||| || ||||||||||| || | || |||| | ||| Sbjct 20460 AATTGCATAACAATCGAAGATACTAATGGTAACCGGAAATTATATAAACGGCGATATGAA 20401 Query 17415 GAGAAGATCGATAACGTCGCAGCCATGATGGATGCT 17450 | ||||| ||| || ||||| |||||||||||| Sbjct 20400 GCAAAGATTGATCCGGTTGCAGCAATGATGGATGCT 20365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 249664483870475