Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_023696.1 Length=157568 Score E Sequences producing significant alignments: (Bits) Value seq3148 96.9 3e-15 seq4079 93.3 4e-14 seq1312 93.3 4e-14 seq112 93.3 4e-14 seq4669 91.5 1e-13 seq3449 84.2 2e-11 seq755 82.4 8e-11 >seq3148 Length=25767 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 118180 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTAC-GTCATGGGCATCACCTC 118238 ||||| |||||||| || | || || |||| ||||| ||| ||||||||||| Sbjct 8019 GGCCCCGGCCGTGGTAGTGCGGCAGGTTCAGTGGTGGCCTACTGTC-TGGGCATCACCAA 8077 Query 118239 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGA 118298 |||||||||| | ||||||||||| |||||||||| || ||||||| |||||| | Sbjct 8078 GATCGACCCGCTGAAGTACGACCTCCTGTTCGAGCGTTTCCTCAACCCCGACCGCATCTC 8137 Query 118299 CTTCCCCGACATCGACGTCGACTTC 118323 | ||||| |||||| ||||||| Sbjct 8138 GCTGCCCGATATCGACACCGACTTC 8162 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 119231 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCC-GCAC-CGCCAAGGAGCTGGC 119288 ||||||| |||||| ||||| ||||||||| |||| | || | ||| | || |||| Sbjct 8977 ACACCTATGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGAC--AGTTGGC 9034 Query 119289 CGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGA 119348 | ||||||| |||||| ||| || || |||| ||| || ||||||||||| || Sbjct 9035 CAACTTCACCCGTGGCGAGAGCGACGCCCTTCGCAAGGCCATGGGTAAGAAGAAGATTGA 9094 Query 119349 GATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGC 119385 |||| |||||| || |||| ||||| |||| ||| Sbjct 9095 GATCGTCAACGCCATGAAGCCTAAGTTCATCGAGGGC 9131 >seq4079 Length=28942 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/162 (73%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 119231 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGAT-CCGCAC---CGCCAAGGAGCTG 119286 |||||||||||||| ||||| ||||||||| |||| | || | |||| || || Sbjct 11228 ACACCTACGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGCC----AGTTG 11173 Query 119287 GCCGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATG 119346 |||| ||||||| |||||| ||| || ||||||| ||| || |||||||||| | Sbjct 11172 GCCGACTTCACCCGCGGCGAGAGCGACGCCCTCCGTAAGGCCATGGGTAAGAAGAAGAAG 11113 Query 119347 GAGATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGCTGC 119388 || ||| || | | || |||||||||| |||| ||| || Sbjct 11112 GACATCGTCGATGCCATGAAGCCCAAGTTCATCGAGGGCGGC 11071 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 118180 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 118239 || || ||||||||||| || | || |||| ||||| | |||||||||| | Sbjct 12186 GGGCCAGGCCGTGGCTCGGCAGCCGGTAGTGTGGTGGCCTACTGCCTGGGCATCACGAAG 12127 Query 118240 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 118299 ||||||||| | |||||||||||| |||||||||| || | ||||| ||||| | | Sbjct 12126 ATCGACCCGCTGAAGTACGACCTGCTGTTCGAGCGTTTCCTGAACCCCGACCGTATCTCC 12067 Query 118300 TTCCCCGACATCGACGTCGACTTC 118323 | ||||| ||||| ||||||| Sbjct 12066 CTGCCCGATATCGATACCGACTTC 12043 >seq1312 Length=3891 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 118180 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 118239 || || |||||||| || || | ||||| || | ||| | |||||||||| | Sbjct 3108 GGACCTGGCCGTGGGTCGGCAGCAGGCTCCACAGTGGCATACTGCCTGGGCATCACGATG 3167 Query 118240 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 118299 | ||||| |||||||||||||| |||||||||| || ||||||||||||| | | Sbjct 3168 GTGGACCCCATCAAGTACGACCTCCTGTTCGAGCGATTCCTCAACCCGGACCGTATCTCC 3227 Query 118300 TTCCCCGACATCGACGTCGACTTC 118323 |||| || |||||||| |||||| Sbjct 3228 CTCCCGGATATCGACGTGGACTTC 3251 >seq112 Length=216842 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 118180 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 118239 || || || || ||||| || | || ||| |||| |||| | | |||||||| | Sbjct 52088 GGACCCGGACGAGGCTCGGCAGCCGGTTCGGTGGTGGCCTATTGCCTCGGCATCACACAG 52029 Query 118240 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 118299 || |||||| |||||||||||||| |||||||||| || |||| || |||||| | | Sbjct 52028 ATAGACCCGCTCAAGTACGACCTGCTGTTCGAGCGGTTCCTCAATCCCGACCGCATCTCC 51969 Query 118300 TTCCCCGACATCGACGTCGACTTC 118323 | ||||| |||||| ||||||| Sbjct 51968 CTGCCCGATATCGACACCGACTTC 51945 >seq4669 Length=35002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 7/124 (6%) Strand=Plus/Plus Query 119228 TGAACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGC---ACCGCCAAGGAGC 119284 |||| |||||||||||| ||||||||||||||| | || | | | | |||| | Sbjct 8067 TGAA-ACCTACGGCATCACCGTCTACCAGGAGCAGGTCATGCTCCTGAGCCGCAAG---C 8122 Query 119285 TGGCCGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGA 119344 | ||||| ||||||| ||||||||||| || || || |||| ||| ||||||||||||| Sbjct 8123 TCGCCGGCTTCACCCGCGGCGAGGCCGACCGCCTCCGCAAGGCCATGGGCAAGAAGAAGA 8182 Query 119345 TGGA 119348 | || Sbjct 8183 TAGA 8186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 118180 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 118239 ||||| ||||| || ||||| | || | ||| | ||| | |||| |||||| Sbjct 6976 GGCCCCGGCCGAGGTTCCGCAGCCGGAAGCGTCGTCGCTTACTGCCTGGGTATCACCAAC 7035 Query 118240 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCCG 118297 ||||||| |||||||| |||| |||||||||| || |||| || |||||| | || Sbjct 7036 CTCGACCCCCTCAAGTACAACCTCCTGTTCGAGCGTTTCCTCAATCCCGACCGCATCTCG 7095 Query 118298 ACTTCCCCGACATCGACGTCGACTTCCAGAA 118328 | | ||||| ||||||||||||||| |||| Sbjct 7096 A--TGCCCGATATCGACGTCGACTTCGAGAA 7124 >seq3449 Length=4901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 119231 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGC-ACCGCCAAGGAGCTGGCC 119289 |||||||||||||| |||||| ||||||||| |||| | | ||| | |||||||| Sbjct 3945 ACACCTACGGCATCACGGTCTATCAGGAGCAGGTGATGCTCTTGAGCCGA-CAGCTGGCC 3887 Query 119290 GGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAG 119349 | ||||||| || ||| ||| ||||| |||| || || |||||||||| ||| Sbjct 3886 GACTTCACCCGCGGTGAGAGCGACGCTCTGCGAAAGGCGATGGGTAAGAAGAAGAAGGAC 3827 Query 119350 ATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGCTGCA 119389 ||| | | | || |||| ||||| |||| ||| ||| Sbjct 3826 ATCGTAGATGCCATGAAGCCGAAGTTCATCGAGGGCGGCA 3787 >seq755 Length=46149 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 118180 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 118239 ||||| ||||| ||| ||||| ||||| | || ||||| | | |||||||| Sbjct 19271 GGCCCTGGCCGAGGCAGCGCCGCCGGCTCCGTCGTAGCCTACTGCCTTCGCATCACCAAC 19212 Query 118240 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 118299 | || || ||||||||| | ||| |||||||||| || |||||||||||||| | | Sbjct 19211 CTGGATCCAATCAAGTACCAACTGCTGTTCGAGCGTTTCCTCAACCCGGACCGCATCTCC 19152 Query 118300 TTCCCCGACATCGACGTCGACTT 118322 | || || || ||||| ||||| Sbjct 19151 ATGCCGGATATAGACGTGGACTT 19129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504057470589120