Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_023725.1 Length=156646 Score E Sequences producing significant alignments: (Bits) Value seq3148 96.9 3e-15 seq4079 93.3 4e-14 seq1312 93.3 4e-14 seq112 93.3 4e-14 seq4669 91.5 1e-13 seq3449 84.2 2e-11 seq755 82.4 8e-11 >seq3148 Length=25767 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 115941 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTAC-GTCATGGGCATCACCTC 115999 ||||| |||||||| || | || || |||| ||||| ||| ||||||||||| Sbjct 8019 GGCCCCGGCCGTGGTAGTGCGGCAGGTTCAGTGGTGGCCTACTGTC-TGGGCATCACCAA 8077 Query 116000 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGA 116059 |||||||||| | ||||||||||| |||||||||| || ||||||| |||||| | Sbjct 8078 GATCGACCCGCTGAAGTACGACCTCCTGTTCGAGCGTTTCCTCAACCCCGACCGCATCTC 8137 Query 116060 CTTCCCCGACATCGACGTCGACTTC 116084 | ||||| |||||| ||||||| Sbjct 8138 GCTGCCCGATATCGACACCGACTTC 8162 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 116992 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCC-GCAC-CGCCAAGGAGCTGGC 117049 ||||||| |||||| ||||| ||||||||| |||| | || | ||| | || |||| Sbjct 8977 ACACCTATGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGAC--AGTTGGC 9034 Query 117050 CGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGA 117109 | ||||||| |||||| ||| || || |||| ||| || ||||||||||| || Sbjct 9035 CAACTTCACCCGTGGCGAGAGCGACGCCCTTCGCAAGGCCATGGGTAAGAAGAAGATTGA 9094 Query 117110 GATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGC 117146 |||| |||||| || |||| ||||| |||| ||| Sbjct 9095 GATCGTCAACGCCATGAAGCCTAAGTTCATCGAGGGC 9131 >seq4079 Length=28942 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/162 (73%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 116992 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGAT-CCGCAC---CGCCAAGGAGCTG 117047 |||||||||||||| ||||| ||||||||| |||| | || | |||| || || Sbjct 11228 ACACCTACGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGCC----AGTTG 11173 Query 117048 GCCGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATG 117107 |||| ||||||| |||||| ||| || ||||||| ||| || |||||||||| | Sbjct 11172 GCCGACTTCACCCGCGGCGAGAGCGACGCCCTCCGTAAGGCCATGGGTAAGAAGAAGAAG 11113 Query 117108 GAGATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGCTGC 117149 || ||| || | | || |||||||||| |||| ||| || Sbjct 11112 GACATCGTCGATGCCATGAAGCCCAAGTTCATCGAGGGCGGC 11071 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 115941 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 116000 || || ||||||||||| || | || |||| ||||| | |||||||||| | Sbjct 12186 GGGCCAGGCCGTGGCTCGGCAGCCGGTAGTGTGGTGGCCTACTGCCTGGGCATCACGAAG 12127 Query 116001 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 116060 ||||||||| | |||||||||||| |||||||||| || | ||||| ||||| | | Sbjct 12126 ATCGACCCGCTGAAGTACGACCTGCTGTTCGAGCGTTTCCTGAACCCCGACCGTATCTCC 12067 Query 116061 TTCCCCGACATCGACGTCGACTTC 116084 | ||||| ||||| ||||||| Sbjct 12066 CTGCCCGATATCGATACCGACTTC 12043 >seq1312 Length=3891 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 115941 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 116000 || || |||||||| || || | ||||| || | ||| | |||||||||| | Sbjct 3108 GGACCTGGCCGTGGGTCGGCAGCAGGCTCCACAGTGGCATACTGCCTGGGCATCACGATG 3167 Query 116001 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 116060 | ||||| |||||||||||||| |||||||||| || ||||||||||||| | | Sbjct 3168 GTGGACCCCATCAAGTACGACCTCCTGTTCGAGCGATTCCTCAACCCGGACCGTATCTCC 3227 Query 116061 TTCCCCGACATCGACGTCGACTTC 116084 |||| || |||||||| |||||| Sbjct 3228 CTCCCGGATATCGACGTGGACTTC 3251 >seq112 Length=216842 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 115941 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 116000 || || || || ||||| || | || ||| |||| |||| | | |||||||| | Sbjct 52088 GGACCCGGACGAGGCTCGGCAGCCGGTTCGGTGGTGGCCTATTGCCTCGGCATCACACAG 52029 Query 116001 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 116060 || |||||| |||||||||||||| |||||||||| || |||| || |||||| | | Sbjct 52028 ATAGACCCGCTCAAGTACGACCTGCTGTTCGAGCGGTTCCTCAATCCCGACCGCATCTCC 51969 Query 116061 TTCCCCGACATCGACGTCGACTTC 116084 | ||||| |||||| ||||||| Sbjct 51968 CTGCCCGATATCGACACCGACTTC 51945 >seq4669 Length=35002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 7/124 (6%) Strand=Plus/Plus Query 116989 TGAACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGC---ACCGCCAAGGAGC 117045 |||| |||||||||||| ||||||||||||||| | || | | | | |||| | Sbjct 8067 TGAA-ACCTACGGCATCACCGTCTACCAGGAGCAGGTCATGCTCCTGAGCCGCAAG---C 8122 Query 117046 TGGCCGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGA 117105 | ||||| ||||||| ||||||||||| || || || |||| ||| ||||||||||||| Sbjct 8123 TCGCCGGCTTCACCCGCGGCGAGGCCGACCGCCTCCGCAAGGCCATGGGCAAGAAGAAGA 8182 Query 117106 TGGA 117109 | || Sbjct 8183 TAGA 8186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 115941 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 116000 ||||| ||||| || ||||| | || | ||| | ||| | |||| |||||| Sbjct 6976 GGCCCCGGCCGAGGTTCCGCAGCCGGAAGCGTCGTCGCTTACTGCCTGGGTATCACCAAC 7035 Query 116001 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCCG 116058 ||||||| |||||||| |||| |||||||||| || |||| || |||||| | || Sbjct 7036 CTCGACCCCCTCAAGTACAACCTCCTGTTCGAGCGTTTCCTCAATCCCGACCGCATCTCG 7095 Query 116059 ACTTCCCCGACATCGACGTCGACTTCCAGAA 116089 | | ||||| ||||||||||||||| |||| Sbjct 7096 A--TGCCCGATATCGACGTCGACTTCGAGAA 7124 >seq3449 Length=4901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 116992 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGC-ACCGCCAAGGAGCTGGCC 117050 |||||||||||||| |||||| ||||||||| |||| | | ||| | |||||||| Sbjct 3945 ACACCTACGGCATCACGGTCTATCAGGAGCAGGTGATGCTCTTGAGCCGA-CAGCTGGCC 3887 Query 117051 GGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAG 117110 | ||||||| || ||| ||| ||||| |||| || || |||||||||| ||| Sbjct 3886 GACTTCACCCGCGGTGAGAGCGACGCTCTGCGAAAGGCGATGGGTAAGAAGAAGAAGGAC 3827 Query 117111 ATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGCTGCA 117150 ||| | | | || |||| ||||| |||| ||| ||| Sbjct 3826 ATCGTAGATGCCATGAAGCCGAAGTTCATCGAGGGCGGCA 3787 >seq755 Length=46149 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 115941 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 116000 ||||| ||||| ||| ||||| ||||| | || ||||| | | |||||||| Sbjct 19271 GGCCCTGGCCGAGGCAGCGCCGCCGGCTCCGTCGTAGCCTACTGCCTTCGCATCACCAAC 19212 Query 116001 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 116060 | || || ||||||||| | ||| |||||||||| || |||||||||||||| | | Sbjct 19211 CTGGATCCAATCAAGTACCAACTGCTGTTCGAGCGTTTCCTCAACCCGGACCGCATCTCC 19152 Query 116061 TTCCCCGACATCGACGTCGACTT 116083 | || || || ||||| ||||| Sbjct 19151 ATGCCGGATATAGACGTGGACTT 19129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501107258640240