Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_023733.1 Length=154573 Score E Sequences producing significant alignments: (Bits) Value seq1312 98.7 1e-15 seq1731 96.9 3e-15 seq4937 93.3 4e-14 seq4079 93.3 4e-14 seq3148 93.3 4e-14 seq4669 91.5 1e-13 seq3952 91.5 1e-13 seq3314 91.5 1e-13 seq112 89.7 5e-13 seq157 86.0 6e-12 seq3449 84.2 2e-11 seq755 82.4 8e-11 seq121 82.4 8e-11 seq32 82.4 8e-11 >seq1312 Length=3891 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 114468 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTAGTCACCTACGTCATGGGCATCACCTCG 114527 || || |||||||| || || | ||||| ||| | ||| | |||||||||| | Sbjct 3108 GGACCTGGCCGTGGGTCGGCAGCAGGCTCCACAGTGGCATACTGCCTGGGCATCACGATG 3167 Query 114528 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 114587 | ||||| |||||||||||||| |||||||||| || ||||||||||||| | | Sbjct 3168 GTGGACCCCATCAAGTACGACCTCCTGTTCGAGCGATTCCTCAACCCGGACCGTATCTCC 3227 Query 114588 TTCCCCGACATCGACGTCGACTTC 114611 |||| || |||||||| |||||| Sbjct 3228 CTCCCGGATATCGACGTGGACTTC 3251 >seq1731 Length=76336 Score = 96.9 bits (106), Expect = 3e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 91238 CGGGGTGTAGTTCAGTTTGGA-AGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGA 91296 |||||||| | ||||||||| ||||| | ||||||||||||| | ||||||||||||| Sbjct 59001 CGGGGTGTGGCTCAGTTTGGCTAGAGCACCTGGTTTGGGACCAGGGGGTCGCAGGTTCGA 59060 Query 91297 ATCCTGTCACCCCGACTCAG 91316 ||||||||||||||||| || Sbjct 59061 ATCCTGTCACCCCGACTTAG 59080 >seq4937 Length=6770 Score = 93.3 bits (102), Expect = 4e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 91238 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGAA 91297 |||| ||||| ||| | || || |||||||||||||||||||| ||||||||||||||| Sbjct 156 CGGGATGTAGCGCAGCT-GGTAGCGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 98 Query 91298 TCCTGTCACCCCGACT 91313 |||||||| ||||||| Sbjct 97 TCCTGTCATCCCGACT 82 >seq4079 Length=28942 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/162 (73%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 115519 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGAT-CCGCAC---CGCCAAGGAGCTG 115574 |||||||||||||| ||||| ||||||||| |||| | || | |||| || || Sbjct 11228 ACACCTACGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGCC----AGTTG 11173 Query 115575 GCCGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATG 115634 |||| ||||||| |||||| ||| || ||||||| ||| || |||||||||| | Sbjct 11172 GCCGACTTCACCCGCGGCGAGAGCGACGCCCTCCGTAAGGCCATGGGTAAGAAGAAGAAG 11113 Query 115635 GAGATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGCTGC 115676 || ||| || | | || |||||||||| |||| ||| || Sbjct 11112 GACATCGTCGATGCCATGAAGCCCAAGTTCATCGAGGGCGGC 11071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 114468 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTAGTCACCTACGTCATGGGCATCACCTCG 114527 || || ||||||||||| || | || | || ||||| | |||||||||| | Sbjct 12186 GGGCCAGGCCGTGGCTCGGCAGCCGGTAGTGTGGTGGCCTACTGCCTGGGCATCACGAAG 12127 Query 114528 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 114587 ||||||||| | |||||||||||| |||||||||| || | ||||| ||||| | | Sbjct 12126 ATCGACCCGCTGAAGTACGACCTGCTGTTCGAGCGTTTCCTGAACCCCGACCGTATCTCC 12067 Query 114588 TTCCCCGACATCGACGTCGACTTC 114611 | ||||| ||||| ||||||| Sbjct 12066 CTGCCCGATATCGATACCGACTTC 12043 >seq3148 Length=25767 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 114468 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTAGTCACCTAC-GTCATGGGCATCACCTC 114526 ||||| |||||||| || | || || | || ||||| ||| ||||||||||| Sbjct 8019 GGCCCCGGCCGTGGTAGTGCGGCAGGTTCAGTGGTGGCCTACTGTC-TGGGCATCACCAA 8077 Query 114527 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGA 114586 |||||||||| | ||||||||||| |||||||||| || ||||||| |||||| | Sbjct 8078 GATCGACCCGCTGAAGTACGACCTCCTGTTCGAGCGTTTCCTCAACCCCGACCGCATCTC 8137 Query 114587 CTTCCCCGACATCGACGTCGACTTC 114611 | ||||| |||||| ||||||| Sbjct 8138 GCTGCCCGATATCGACACCGACTTC 8162 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 115519 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCC-GCAC-CGCCAAGGAGCTGGC 115576 ||||||| |||||| ||||| ||||||||| |||| | || | ||| | || |||| Sbjct 8977 ACACCTATGGCATCACCGTCTATCAGGAGCAGGTGATGCTGCTCTCGCGAC--AGTTGGC 9034 Query 115577 CGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGA 115636 | ||||||| |||||| ||| || || |||| ||| || ||||||||||| || Sbjct 9035 CAACTTCACCCGTGGCGAGAGCGACGCCCTTCGCAAGGCCATGGGTAAGAAGAAGATTGA 9094 Query 115637 GATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGC 115673 |||| |||||| || |||| ||||| |||| ||| Sbjct 9095 GATCGTCAACGCCATGAAGCCTAAGTTCATCGAGGGC 9131 >seq4669 Length=35002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 7/124 (6%) Strand=Plus/Plus Query 115516 TGAACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGC---ACCGCCAAGGAGC 115572 |||| |||||||||||| ||||||||||||||| | || | | | | |||| | Sbjct 8067 TGAA-ACCTACGGCATCACCGTCTACCAGGAGCAGGTCATGCTCCTGAGCCGCAAG---C 8122 Query 115573 TGGCCGGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGA 115632 | ||||| ||||||| ||||||||||| || || || |||| ||| ||||||||||||| Sbjct 8123 TCGCCGGCTTCACCCGCGGCGAGGCCGACCGCCTCCGCAAGGCCATGGGCAAGAAGAAGA 8182 Query 115633 TGGA 115636 | || Sbjct 8183 TAGA 8186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 114468 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTAGTCACCTACGTCATGGGCATCACCTCG 114527 ||||| ||||| || ||||| | || | ||| | ||| | |||| |||||| Sbjct 6976 GGCCCCGGCCGAGGTTCCGCAGCCGGAAGCGTCGTCGCTTACTGCCTGGGTATCACCAAC 7035 Query 114528 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCCG 114585 ||||||| |||||||| |||| |||||||||| || |||| || |||||| | || Sbjct 7036 CTCGACCCCCTCAAGTACAACCTCCTGTTCGAGCGTTTCCTCAATCCCGACCGCATCTCG 7095 Query 114586 ACTTCCCCGACATCGACGTCGACTTCCAGAA 114616 | | ||||| ||||||||||||||| |||| Sbjct 7096 A--TGCCCGATATCGACGTCGACTTCGAGAA 7124 >seq3952 Length=6226 Score = 91.5 bits (100), Expect = 1e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 91238 CGGGGTGTAGTTCAGTTTGGA-AGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGA 91296 |||||||| | ||||||||| ||||| | ||||||||||||| | ||||||||||||| Sbjct 1004 CGGGGTGTGGCTCAGTTTGGCTAGAGCACCTGGTTTGGGACCAGGGGGTCGCAGGTTCGA 945 Query 91297 ATCCTGTCACCCCGA 91311 ||||||||||||||| Sbjct 944 ATCCTGTCACCCCGA 930 >seq3314 Length=12619 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 91237 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGA 91296 ||||||||||| ||| || || || | ||||||||||||| | |||||||||||||| Sbjct 12497 ACGGGGTGTAGCGCAGCCCGGTAGCGCACCTGGTTTGGGACCAGGGTGTCGCAGGTTCGA 12556 Query 91297 ATCCTGTCACCCCGACTCAGCGA 91319 |||||||||||||||| ||| || Sbjct 12557 ATCCTGTCACCCCGACGCAGAGA 12579 >seq112 Length=216842 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 114468 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTAGTCACCTACGTCATGGGCATCACCTCG 114527 || || || || ||||| || | || ||| | || |||| | | |||||||| | Sbjct 52088 GGACCCGGACGAGGCTCGGCAGCCGGTTCGGTGGTGGCCTATTGCCTCGGCATCACACAG 52029 Query 114528 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 114587 || |||||| |||||||||||||| |||||||||| || |||| || |||||| | | Sbjct 52028 ATAGACCCGCTCAAGTACGACCTGCTGTTCGAGCGGTTCCTCAATCCCGACCGCATCTCC 51969 Query 114588 TTCCCCGACATCGACGTCGACTTC 114611 | ||||| |||||| ||||||| Sbjct 51968 CTGCCCGATATCGACACCGACTTC 51945 >seq157 Length=24126 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 91238 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGAA 91297 ||||| |||| |||| ||| ||||||||||||||||||||||| |||||| ||||||| Sbjct 8202 CGGGGCGTAGCTCAGCCTGGTAGAGCGCTTGGTTTGGGACCAAGATGTCGCGTGTTCGAA 8143 Query 91298 TCCTGTCACCCCGAC 91312 || ||| ||||||| Sbjct 8142 TCTCGTCGCCCCGAC 8128 >seq3449 Length=4901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 115519 ACACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGC-ACCGCCAAGGAGCTGGCC 115577 |||||||||||||| |||||| ||||||||| |||| | | ||| | |||||||| Sbjct 3945 ACACCTACGGCATCACGGTCTATCAGGAGCAGGTGATGCTCTTGAGCCGA-CAGCTGGCC 3887 Query 115578 GGGTTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAG 115637 | ||||||| || ||| ||| ||||| |||| || || |||||||||| ||| Sbjct 3886 GACTTCACCCGCGGTGAGAGCGACGCTCTGCGAAAGGCGATGGGTAAGAAGAAGAAGGAC 3827 Query 115638 ATCATCAACGAGCTGGAGCCCAAGTTTCTCGACGGCTGCA 115677 ||| | | | || |||| ||||| |||| ||| ||| Sbjct 3826 ATCGTAGATGCCATGAAGCCGAAGTTCATCGAGGGCGGCA 3787 >seq755 Length=46149 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 114468 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTAGTCACCTACGTCATGGGCATCACCTCG 114527 ||||| ||||| ||| ||||| ||||| | || ||||| | | |||||||| Sbjct 19271 GGCCCTGGCCGAGGCAGCGCCGCCGGCTCCGTCGTAGCCTACTGCCTTCGCATCACCAAC 19212 Query 114528 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 114587 | || || ||||||||| | ||| |||||||||| || |||||||||||||| | | Sbjct 19211 CTGGATCCAATCAAGTACCAACTGCTGTTCGAGCGTTTCCTCAACCCGGACCGCATCTCC 19152 Query 114588 TTCCCCGACATCGACGTCGACTT 114610 | || || || ||||| ||||| Sbjct 19151 ATGCCGGATATAGACGTGGACTT 19129 >seq121 Length=94419 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 91238 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGAA 91297 |||||||||| |||| || || || | ||||||||||||| | |||||||||||||| Sbjct 445 CGGGGTGTAGCGCAGTCCGGTAGCGCTCCTGGTTTGGGACCAGGCGGTCGCAGGTTCGAA 386 Query 91298 TCCTGTCACCCCGAC 91312 ||||||| ||||||| Sbjct 385 TCCTGTCGCCCCGAC 371 >seq32 Length=28727 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 91238 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGAA 91297 |||||||||| ||||| || || | | ||||||||||||| | |||||||||||||| Sbjct 4523 CGGGGTGTAGCGCAGTT-GGTAGCGTTCCTGGTTTGGGACCAGGCTGTCGCAGGTTCGAG 4465 Query 91298 TCCTGTCACCCCGAC 91312 ||||||||||||||| Sbjct 4464 TCCTGTCACCCCGAC 4450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494474081449320