Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= NC_023735.1
Length=76797
Score E
Sequences producing significant alignments: (Bits) Value
seq1602 419 1e-112
>seq1602
Length=30070
Score = 419 bits (464), Expect = 1e-112
Identities = 1130/1717 (66%), Gaps = 31/1717 (2%)
Strand=Plus/Minus
Query 12302 TCGAACACCGCAGTTCCGATTTACTACGGAAAGTTCCGTGAAGCGGTGCTCAATGGTGAG 12361
|| || ||||||||||| ||| || || | || ||||| || || | | || |||
Sbjct 22071 TCTAATACCGCAGTTCCATATTATTATGGGCAATTTCGTGATGCTGTATTAAGAGGCGAG 22012
Query 12362 ATTCCGGTAAACCGAGAAATCTCCATGGAGATGAATCGCATCGACGACCTCATCGCAAAT 12421
||||| || | ||| || || ||||| ||||| | || || || || | | ||
Sbjct 22011 ATTCCAGTTTGCGAAGAGATATCTATGGAAATGAACAGAATAGATTCTCTAATAGAAGAT 21952
Query 12422 GACAACATCTATTACGATGACCAGGCTGTCGAGGGATTCATTCGCTATTGTGAAAACGAG 12481
|||| ||||||||||| | || | | |||| ||| |||||| ||||| |||
Sbjct 21951 CCTGACATTTATTACGATGAAGATGCAATTAAAGGATGGATTGCCTATTGCGAAAATGAG 21892
Query 12482 ATGACTCTGACCGATGGTTCAGATCTTCATCTCTTGGATTCGTTCAAACTTTGGGCCGAA 12541
||||| || || ||||| || ||| | ||||| || ||| || ||||| ||||| |||
Sbjct 21891 ATGACGCTAACTGATGGCTCTGATTTACATCTTTTAGATAGCTTTAAACTGTGGGCAGAA 21832
Query 12542 CAAATCTTCGGATGGTACTACTTCGTCGAACGAAGTGTCTACGAACCTTTCGAAGACAAT 12601
||||| | ||||||||| || |||| |||||| || || ||||| || |||
Sbjct 21831 CAAATATACGGATGGTATTATTTCGATGAACGATCCGTGTATGAACCAGGACCCGATAAT 21772
Query 12602 CACGGTGGGCGGTACGTCAACAAGGTTGTGAAGAAACG---ACTGATCACTAAGCAGTAT 12658
|| || |||| || |||| || | | ||||| || | || ||| ||||||
Sbjct 21771 CATGGCGGGCATTATGTCACTAAAATGATCAAGAAGCGTTTAGTGCGAACT---CAGTAT 21715
Query 12659 CTGATCGTCGCCCGAGGCGCAGCCAAGTCGCTCTATGAGTCTCTTCTCCAGAGCTACTTC 12718
| || || || |||||||| || ||||| | ||||| | | | || ||
Sbjct 21714 TTAATAGTAGCACGAGGCGCTGCTAAGTCTATGTATGAAAGTTGTATACAATCATATCAT 21655
Query 12719 CTCAATGTCGACACACAGACCACCCATCAGATCACGACCTCGCCGACCATGAAGCAGTCC 12778
|| ||||| || || ||||| | || |||| || | || || ||| ||| |
Sbjct 21654 CTTAATGTAGATACCTCAACCACATACCAAGTCACAACAGCACCAACGATGCTGCAAGCA 21595
Query 12779 GAGGAAGTGATGGCCCCGTTCCGAACCGCGATCACTCGTGCAAGAGGACCGCTGTTCGAA 12838
|| ||||| ||| | || ||||||| ||||| |||||||| ||||| ||| |||| |
Sbjct 21594 GACGAAGTTATGTCTCCAATCCGAACAGCGATTACTCGTGCCAGAGGTCCGTTGTTTCAG 21535
Query 12839 TTCCTTACCGAGGGTTCTATGCAGAACACCACGGGTA--ATAGGTTTGCTAGGCAAAAGT 12896
| | || || ||||| | || || || || |||| | || | | || ||| |
Sbjct 21534 ATGTTAACTGAAGGTTCACTTCAAAATACGACCGGTAGCAAAGCTAATCGAGTTAAA--T 21477
Query 12897 TGGCTTCCACCAAGAAGGGTATCGAGAACTTCTTGACGGGCTCCATGCTAGAAGTTCGCC 12956
| ||| || ||||||||||||||||| ||||| || || || ||| | | ||| | |
Sbjct 21476 TAGCTAGTACAAAGAAGGGTATCGAGAATTTCTTAACAGGATCAATGATTGCAGTAAGGC 21417
Query 12957 CGATGTCCATCAACAAGCTGCAGGGTCTTCGACCCAAGGTCTCGACGGTGGACGAATGGT 13016
| ||| | | ||||||| || || | ||| |||||| | || || || ||||||
Sbjct 21416 CAATGACAGTTGACAAGCTTCAAGGATTACGATGCAAGGTAGCTACTGTCGATGAATGGC 21357
Query 13017 TGTCCGGCGACATCCGAGAGGACGTCATCGGCGCCATCGAACAGGGCGCGTCCAAGCTTG 13076
| || ||||| || ||||| || || || || || | || || || ||| | || ||
Sbjct 21356 TTTCTGGCGATATTCGAGAAGATGTAATTGGAGCTTTAGAGCAAGGTGCGGCTAAAGGTG 21297
Query 13077 ------ACGACTACTTGATCGTTGCCGTCAGCTCGGAGGGAACTGTTCGAAACGGGTCGG 13130
| ||||| || || | ||| || || || || || || ||||| || | |
Sbjct 21296 GAATGGATGACTATTTAATAATAGCCACTAGTTCTGAAGGTACAGTACGAAATGGCCCTG 21237
Query 13131 GCGACACTATCAAAATGGAACTTGCAGACATCCTCAAGGGGGAGTACTCTGCGCCGCACG 13190
| || | |||||||||| ||| || || || || || || || |||||||
Sbjct 21236 GAGATAGTATCAAAATGATGCTTATGGATATTCTTAAAGGTGAATATATCAATCCGCACG 21177
Query 13191 TCTCCATCTGGCATTACAAGTTGGACAATCTCGAAGAGGTTGGTCGACCTGAGATGTGGT 13250
|| || ||| || ||| | || || | || || || | | ||| || ||||||
Sbjct 21176 TCAGTATTTGGTGGTATAAGCTAGATAAATTAGATGAAGTGGCGCAACCAGATATGTGGC 21117
Query 13251 TGAAGGCGAACCCCAACCTCGGTAAGACCGTAACTTACGAAACTTACCAGTTGGATGTAG 13310
| || || || || || |||||||||| ||| | ||||| || ||||| ||||||||||
Sbjct 21116 TTAAAGCCAATCCAAATATCGGTAAGACTGTATCATACGAGACATACCAATTGGATGTAG 21057
Query 13311 AACGAGCTGAGAAAGCGCCTGCATCTCGAAACGATATCTTGGCTAAGCGATTCGGAATCC 13370
|| |||| || ||||| ||||| |||||| |||||||| ||||| || || || || |
Sbjct 21056 AAAGAGCAGAAAAAGCACCTGCTAATCGAAATGATATCTTAGCTAAACGCTTTGGTATAC 20997
Query 13371 CTATGGAGGGGTACACCTACTTCTTCACTTATGAAGAGACGATTCCTCATCGTCGTCAAA 13430
||||||| || || ||||||| ||||| |||||||| || | ||| ||||| |||
Sbjct 20996 CTATGGAAGGTTATACCTACTATTTCACGTATGAAGAAAC-ACTCC-CATCG-CGTAGGC 20940
Query 13431 GCTTCTGGCGTCA------GCCTTGTGCTCTCGGCGCTGACCTTTCGCAGGGCGATGATT 13484
|||| | | | || ||| | | || || || | || || || ||||| |
Sbjct 20939 GCTTAAGTTTTAATGGATTACCATGTTCCATTGGAGCCGATTTATCACAAGGTGATGACT 20880
Query 13485 TCTGTGCGTTCACGTTCTTCTTCCCTCTTCGAAACGGGAAGTTCGGAATCAAGACTCGCA 13544
| | || | || || ||| | ||| || || || || || ||||| || |
Sbjct 20879 TTACATCTTTTTGTTGTTTATTTCCTATGCGAGGCGACAAATTTGGCATTAAGACGCGAA 20820
Query 13545 GCTACATCACCGAACTAACGTTGATGAAGTTGCCTGGCGCACTCCGACACAAGTACGACG 13604
|||||||||||| ||| |||| || ||||| || | ||| || ||||| |
Sbjct 20819 ATTACATCACCGAAAACACGATGATTAAATTGCCAATGGCTATGCGAAGTAAATACGAGG 20760
Query 13605 AATTCGTTGCCGAAGGCAGCTTGCACGTAATGCCCGGCACCATCTTGGAGATGATGGACG 13664
|||| | |||||| || | || ||||| || ||||| | | |||||||| |
Sbjct 20759 AATTTACTAACGAAGGTAGTCTTATTGTTATGCCAGGTACCATTCTTAACATGATGGATG 20700
Query 13665 TCTACGACGATCTGGATAATCACAT-CCAAGACTGCGAGTACGACGTTCGAGCTTTCGGA 13723
| ||||| ||| | || | || | | || || ||||||||| || | || |||
Sbjct 20699 TATACGATGATTTAGACGAGTGGATAGCTAAAC-ATGATTACGACGTTAGATCATTTGGA 20641
Query 13724 TTCGACCCGTACAACGCTAAAGAGTTCGTTGCTCGCTGGGAAGCTGAGA--ACGGACCGT 13781
| || ||||| || ||| |||||||| | || ||| || ||| | || ||||
Sbjct 20640 TATGATCCGTATAATGCTCAAGAGTTCTCAGAGCGTTGG--TGCAAAGAATATGGCCCGT 20583
Query 13782 TTGGTATCGAGAAGGTCATTCAGGGTTCCAAGACCGAATCGGTTCCTCTGGGTGAGCTCA 13841
||| | || || || ||||| ||| | || || ||||| |||||||| || || | |
Sbjct 20582 ATGGGGTAGAAAAAGTAATTCAAGGTGCTAAAACGGAATCCGTTCCTCTAGGCGAATTAA 20523
Query 13842 AAATTCTAAGTGAAGAGCGTTGTCTGATCTTCGACGAAAGCCTGATGTCGTTCACGATGG 13901
| | | |||||| | | | || || ||| | ||| || | ||||
Sbjct 20522 AGAAATTGGCTGAAGATGGACTATTACTGTTTGATGAATTTATTATGCAATTTGCAATGG 20463
Query 13902 GTAACGCCATCACTCTGGAAGACACGAATGGTAACCGCAAGCTTCTCAAGAAGCGACAGG 13961
| || ||| || | ||||| || ||||||||||| || | || |||| | |
Sbjct 20462 GCAATTGCATAACAATCGAAGATACTAATGGTAACCGGAAATTATATAAACGGCGATATG 20403
Query 13962 AAGAGAAGATCGATAACGTCGCAGCCATGATGGATGC 13998
||| ||||| ||| || ||||| |||||||||||
Sbjct 20402 AAGCAAAGATTGATCCGGTTGCAGCAATGATGGATGC 20366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 245610335827362
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |