Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq2964 125 8e-24 seq2701 96.9 4e-15 >seq2964 Length=2227 Score = 125 bits (138), Expect = 8e-24 Identities = 497/769 (65%), Gaps = 15/769 (2%) Strand=Plus/Minus Query 124271 AGATCTTTTGAACGAGAATGCTAATAAAGATTCTCGTGTTTTTCCAACTCAACGGGACCT 124330 |||||| | ||||||||||| || || || ||| |||| || || || ||||| Sbjct 1865 AGATCTGCTTAACGAGAATGCCAACAAGGACAGCAAGGTTATTCCGACCCAGCGTGACCT 1806 Query 124331 TATGGCTGGTATTGTGTCTAAGCACATTGCCAAAAAT---ATGGTCCCGTCTTTTA-TTA 124386 | | || |||||||| | ||| ||| ||| | ||| | || || | || Sbjct 1805 TCTTGCAGGTATTGTTGCACGCCACTATGCAAAACAGCACATGCTTCC-TCAGGAAGTTG 1747 Query 124387 TGAAAGCACATGAAAGCGGAATTATCCATTTCCATGATATTGATTATTCCCCTGCTCTTC 124446 ||| ||| |||||||| || |||||||| || ||| | || ||||| || | ||||| Sbjct 1746 TGAGAGCCCATGAAAGAGGGGAGATCCATTTTCACGATCTCGACTATTCACC-GTTCTTC 1688 Query 124447 C--ATTTACTAATTGCTGTTTAGTAGATTTAAAAGGAATGCTTGAAAACGGGTTTAAGCT 124504 | || | | | | || | | | ||| | |||||||| ||| ||| || ||| | Sbjct 1687 CCGATGTTCAACTGTATGCTGA-TCGATGTCGGCGGAATGCTGGAACGCGGTTTCAAGAT 1629 Query 124505 AGGTAATGCTCAAATTGAAACGCCTAAATCGATTGGTGTTGCTACTGCAATTATGGCACA 124564 |||||||| |||| ||| | ||||| || || || || || || ||| ||||| Sbjct 1628 GGGTAATGCCGAAATCGAATCACCTAAGTCAATCAGTACCGCAACCGCGGTTACCGCACA 1569 Query 124565 AATTACCGCACAGGTTGCTTCACATCAGTACGGCGGAACGACTTTTG-CTAATGTAGATA 124623 || | ||| |||||||| ||| |||||||| || || | | ||| ||| Sbjct 1568 GATCATCGCCCAGGTTGCCAGCCATATCTACGGCGGTACAACCATCAACCGCTGT-GATG 1510 Query 124624 AAGTACTTTCTCCTTATGTTAAACGCACCTATGCAAAACATATT-GAGGATG-CAGAAAA 124681 | || ||| | || ||||||| | | | || | ||| || |||| | || | Sbjct 1509 AGGTGCTTGCCCCGTATGTTA--CCAAGAGTTTCATGAAGTATCAGAAGATGGCCGAGGA 1452 Query 124682 ATGGCAAATCGCTGATGCGTTGAATTATGCCCAATCTAAAACAGAAAAAGACGTATACGA 124741 ||||| || ||||| || | | ||||| | | || ||||| || || || Sbjct 1451 GTGGCACATTCCTGATCCGGACAGCTTTGCCCGAGCCCGTACTGAAAAGGAGTGCTATGA 1392 Query 124742 TGCATTTCAAGCTTATGAGTATGAAGTAAATACTCTTTTTAGCTCAAACGGTCAAACGCC 124801 || || || || ||| ||||||||||| || || || ||| |||||||| || || Sbjct 1391 CGCCTTCCAGTCTCTTGAATATGAAGTAAACACCCTGCATACCTCCAACGGTCAGACTCC 1332 Query 124802 TTTTGTAACAATTACATTTGGTACTGGAACTGACTGGACTGAACGAATTATTCAGAAAGC 124861 || ||||| | || ||| ||||| |||| ||| | || ||||| | Sbjct 1331 GTTCGTAACTCTCGGTTTCGGTCTGGGAACATCCTGGGAGTCACGTCTGATCCAGAAGTC 1272 Query 124862 AATTCTTAAAAACCGCATTAAAGGCCTTGGTCGTGATGGAATAACTCCTATTTTCCCTAA 124921 ||||| || ||| | ||| || || || || || | |||| | |||||||||| Sbjct 1271 TATTCTGAAGAACAGAATTGCTGGTCTCGGCCGCAATCACAGAACTGCGGTTTTCCCTAA 1212 Query 124922 ACTTGTTATGTTCATTGAAGAGGGTGTCAATCTTTATAAAGACGACCCGAACTATGATAT 124981 || || | ||| | ||||| | || | | | | | || || ||||| ||||| Sbjct 1211 GCTGGTGTTTGCCATCAAGGAGGGACTGAACCGTAAAGAGGGTGATCCTAACTACGATAT 1152 Query 124982 TAAGCAGCTTGCTCTAGAGTGTGCAAGCAAAAGAATGTATCCTGATATT 125030 ||| |||| ||||| || || || ||| ||||||||||| |||||| Sbjct 1151 CAAGAAGCTGGCTCTTGAATGCGCCTCCAAGAGAATGTATCCGGATATT 1103 >seq2701 Length=6067 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 || ||||| || ||||| || |||||||| | ||||| ||| |||||| | | Sbjct 5187 GGCGGTCAGCATCTGAATGTGAACGTTCTCAACAGAGAAACACTGCTCGATGCAATGGAA 5246 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 || || |||||||||||| ||||| |||||||| || |||||||| || || || ||| Sbjct 5247 CACCCTGAAAAATATCCTACACTGACAATCCGTGTTTCAGGTTATGCTGTACGTTTCAAC 5306 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 108601 ||| | || ||||||||||| || ||| | | | || || ||| ||| || ||| Sbjct 5307 TCTTTAACCAAAGAACAGCAGCAGGATGTTGTAACAAGAACTTTCACTCAGAAGCTGTAA 5366 Query 108602 T 108602 | Sbjct 5367 T 5367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541111108732320