Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_024125.2 Length=168470 Score E Sequences producing significant alignments: (Bits) Value seq2964 129 6e-25 seq2701 91.5 2e-13 >seq2964 Length=2227 Score = 129 bits (142), Expect = 6e-25 Identities = 619/960 (64%), Gaps = 38/960 (4%) Strand=Plus/Plus Query 44312 GCGATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 44371 ||||||||||| |||||||| |||| ||||| ||||| ||||| || || | || | | Sbjct 951 GCGATACGAGGCAGATTCAGACTTACCACACCCAGATTGTTACGGCCGTCGTGGATCTGA 1010 Query 44372 TTACCAGTCGAATCTTTCCATACGCT-CAAGAAACTA-CGGCAACCCATCGGAGAAACAG 44429 ||| || || | |||||| | || || | ||||| |||||||||| | Sbjct 1011 ACACCGTTC---TCCT--CATACGGGGCGAGGAATGAGCGGCAGCCCATCGGAGT--CTT 1063 Query 44430 GAACAGATGAACCAGTGATAGCTTTAT----TGTTCTTAGCTGAAATAATATCAGGATAC 44485 ||| |||||| || | ||| | || || ||| | | | ||||| |||||| Sbjct 1064 GAA----TGAACCGGTAAC--CTTCACAACCTGATCGTAGTTCAGA--ATATCCGGATAC 1115 Query 44486 ATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTTCGGGTCGTCTTTA 44545 || || ||| ||||| || ||||| |||| || ||||| ||||| || || | | Sbjct 1116 ATTCTCTTGGAGGCGCATTCAAGAGCCAGCTTCTTGATATCGTAGTTAGGATCACCCTCT 1175 Query 44546 TAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAAAATAGGAGTTATCCCA 44605 | | | || | || || | | | | || ||||||||||||| | |||| | | Sbjct 1176 TTACGGTTCAGTCCCTCCTTGATGGCAAACACCAGCTTAGGGAAAACCGCAGTTCTGTGA 1235 Query 44606 TCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTC 44665 | || || ||||| ||| | || |||||||| | ||||| |||| ||| | Sbjct 1236 TTGCGGCCGAGACCAGCAATTCTGTTCTTCAGAATAGACTTCTGGATCAGACGTGACTCC 1295 Query 44666 CAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCCGTTTGAACTAAAG 44725 ||| |||||| ||| || | ||||| || || || || ||||| || || Sbjct 1296 CAGGATGTTCCCAGACCGAAACCGAGAGTTACGAACGGAGTCTGACCGTTGGAGGTATGC 1355 Query 44726 AGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTCTTTTTCTGTTTTA 44785 || || ||||||||||||||| || ||||| || || || || ||||| || Sbjct 1356 AGGGTGTTTACTTCATATTCAAGAGACTGGAAGGCGTCATAGCACTCCTTTTCAGTACGG 1415 Query 44786 GACTGGGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG-CATCCTC-AATATGTT 44843 | ||||| | | || ||||| || ||||| | || | |||| || ||| | Sbjct 1416 GCTCGGGCAAAGCTGTCCGGATCAGGAATGTGCCACTCCTCGGCCATCTTCTGATACTTC 1475 Query 44844 TTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG-CAAAAGTCGTT 44902 || | | | ||||||| || | ||| || | ||| ||| | | || || Sbjct 1476 ATGAAACTCTTGG--TAACATACGGGGCAAGCACCTCATC-ACAGCGGTTGATGGTTGTA 1532 Query 44903 CCGCCGTATTGGTGAGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACG 44962 |||||||| || |||||||| || | || ||||| ||| || || || Sbjct 1533 CCGCCGTAGATATGGCTGGCAACCTGGGCGATGATCTGTGCGGTAACCGCGGTTGCGGTA 1592 Query 44963 CCAATTGATTTAGGAGTTTCAATCTGTGCATTACCTAGCTTAAATCCGTTTTCAAGCATT 45022 | ||||| ||||| | ||| || | |||||||| | ||| || ||| ||| |||||| Sbjct 1593 CTGATTGACTTAGGTGATTCGATTTCGGCATTACCCATCTTGAAACCGCGTTCCAGCATT 1652 Query 45023 CCTTTTAAATCTACTAAACA-ACAATTAGTAAAT--GGAAGAGCAGGGGAATAATCAATA 45079 || | ||| | | | || ||| || | | || |||||| | || ||||| || | | Sbjct 1653 CCGCCGACATCGA-TCAGCATACAGTT-GAACATCGGGAAGAAC-GGTGAATAGTCGAGA 1709 Query 45080 TCGTGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAA-TAAAAGACGGGACCAT--- 45135 ||||| |||||||| || |||||||| ||| ||| || | || || | ||| Sbjct 1710 TCGTGAAAATGGATCTCCCCTCTTTCATGGGCTCTCACAACTTCCTGA-GGAAGCATGTG 1768 Query 45136 ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAAC 45195 | ||| ||| ||| | |||||||| || | |||||| || || || |||| ||| Sbjct 1769 CTGTTTTGCATAGTGGCGTGCAACAATACCTGCAAGAAGGTCACGCTGGGTCGGAATAAC 1828 Query 45196 ACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTTATGAATCAATCC 45255 || || || ||||||||||| | || ||| ||| | | || |||| ||| Sbjct 1829 CTTGCTGTCCTTGTTGGCATTCTCGTTAAGCAGATCTGCATTTGACTGATCGATCAGTCC 1888 >seq2701 Length=6067 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 62942 AACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACTGCATAACCGGATACACG 63001 ||| || |||||||||| || | |||||| || || || |||||||| || ||||| Sbjct 5336 AACATCCTGCTGCTGTTCTTTGGTTAAAGAGTTGAAACGTACAGCATAACCTGAAACACG 5277 Query 63002 GATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCTTCCAGAGTTTCACGACG 63061 ||| ||||| ||||||||||| || || | | |||||| ||| ||||| | Sbjct 5276 GATTGTCAGTGTAGGATATTTTTCAGGGTGTTCCATTGCATCGAGCAGTGTTTCTCTGTT 5217 Query 63062 CAGAACGTTAACGTTCAGGTGTTGACCACCTTC 63094 |||||||| || ||||| || ||||| ||||| Sbjct 5216 GAGAACGTTCACATTCAGATGCTGACCGCCTTC 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538941647017200