Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_024139.1 Length=108483 Score E Sequences producing significant alignments: (Bits) Value seq2964 104 2e-17 >seq2964 Length=2227 Score = 104 bits (114), Expect = 2e-17 Identities = 253/381 (66%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 53564 ACTGAAAAAGAAGTCTATGACGCTTGTCAGGGTTTAGAATATGAAATCAATACCATGTTC 53623 |||||||| || ||||||||| | ||| | | ||||||||| | || ||| || Sbjct 1411 ACTGAAAAGGAGTGCTATGACGCCTTCCAGTCTCTTGAATATGAAGTAAACACCCTGCAT 1352 Query 53624 AACTCTAATGGTCAGAGTCCATTTATTACCTTTGGTTTTGGTCTAGGAACTTCCTGGGAA 53683 | ||| || ||||||| ||| || | || | ||||| ||||| ||||| |||||||| Sbjct 1351 ACCTCCAACGGTCAGACTCCGTTCGTAACTCTCGGTTTCGGTCTGGGAACATCCTGGGAG 1292 Query 53684 GCACGTCTAGTACAGAAAGCAGTACTGAAAGTAC-GCATGGATGGTTTAGGTATCAATAA 53742 ||||||| | ||||| | | ||||| | || | || | |||| | || |||| | Sbjct 1291 TCACGTCTGATCCAGAAGTCTATTCTGAA-GAACAGAATTGCTGGTCTCGGCCGCAATCA 1233 Query 53743 ACGTACAGCTATCTTCCCGAAACTGGTATTTGTACTTCGCGATGGCGTAAATATGAAACC 53802 | || || | ||||| || ||||| |||| | || || | || ||| Sbjct 1232 CAGAACTGCGGTTTTCCCTAAGCTGGTGTTTGCCATCAAGGAGGGACTGAACCGTAAAGA 1173 Query 53803 AGGAGATGTTAATTATGACATCAAGAAGTTAGCTATGAAATGTACTGCTGAACGTATGTA 53862 || ||| ||| || || ||||||||| | ||| | |||| | | | | ||||| Sbjct 1172 GGGTGATCCTAACTACGATATCAAGAAGCTGGCTCTTGAATGCGCCTCCAAGAGAATGTA 1113 Query 53863 TCCAGATTATATCAGCTATGACAAGGTTGTAGAAGTTACTGGAGACTATAAAGTTTCTAT 53922 ||| ||| | | | ||| || ||||||| | ||||| || | || | | || Sbjct 1112 TCCGGATATTCTGAACTACGATCAGGTTGTGAAGGTTACCGGTTCATTCAAGACTCCGAT 1053 Query 53923 GGGCTGCCGTTCATTCCTAGC 53943 ||||||||| |||||||| || Sbjct 1052 GGGCTGCCGCTCATTCCTCGC 1032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346999234717716