Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_024203.1 Length=53513 Score E Sequences producing significant alignments: (Bits) Value seq1602 158 4e-34 >seq1602 Length=30070 Score = 158 bits (174), Expect = 4e-34 Identities = 525/802 (65%), Gaps = 36/802 (4%) Strand=Plus/Minus Query 3775 AAGAAACGTTTA---CGAAATAAACAATACTTAATTATTGCACGGGGTAACTCCAAGACT 3831 ||||| |||||| |||| | || || ||||| | ||||| || | ||| || Sbjct 21741 AAGAAGCGTTTAGTGCGAACT---CAGTATTTAATAGTAGCACGAGGCGCTGCTAAGTCT 21685 Query 3832 TTATATGAAACAACTATTCAAGCATATGGATTAACTGTAGATACATCAACTACAA--CAG 3889 | ||||||| ||| ||| ||||| | | ||||||||| ||||| ||| || Sbjct 21684 ATGTATGAAAGTTGTATACAATCATATCATCTTAATGTAGATACCTCAACCACATACCAA 21625 Query 3890 GTATCACAACAGCTCCAACCATGAAACAAGCGTTAGAAGTAATTCAACCACTGTCTACTG 3949 || ||||||||| ||||| ||| ||||| ||||| || ||| | || | Sbjct 21624 GT--CACAACAGCACCAACGATGCTGCAAGCAGACGAAGTTATGTCTCCAATCCGAACAG 21567 Query 3950 CTATTACTAGGGCTAAAGGACCTTTCTTTAAACTAGTAACTCAAGGT--AGTACGAAAG- 4006 | |||||| | || | ||| || || ||| | | ||||| ||||| | | | ||| Sbjct 21566 CGATTACTCGTGCCAGAGGTCCGTTGTTTCAGATGTTAACTGAAGGTTCACTTCAAAATA 21507 Query 4007 ---CTCGTAGTGGTCCGAACCAAGCAATGCTTGCTACTACGAAAAAGGGTGTTGAAAACA 4063 | |||| | || | || | | |||| ||| || |||||| | || || Sbjct 21506 CGACCGGTAGCAAAGCTAATCGAGTTAAATTAGCTAGTACAAAGAAGGGTATCGAGAATT 21447 Query 4064 AACTGACGAACTCTATTCTTGAAGTTAGACCTATGCGGGTCGATAAGCTTCAAGGTAGTC 4123 | || || || ||| ||| || || ||| || || ||||||||||| | Sbjct 21446 TCTTAACAGGATCAATGATTGCAGTAAGGCCAATGACAGTTGACAAGCTTCAAGGATTAC 21387 Query 4124 GAT-CAAAGTATAATACTGTTGATGAATGGTTATCGGGGGATGTTAAAGAAGATGTAGTC 4182 ||| ||| ||| |||||| ||||||||| | || || ||| || |||||||||| | Sbjct 21386 GATGCAAGGTA-GCTACTGTCGATGAATGGCTTTCTGGCGATATTCGAGAAGATGTAATT 21328 Query 4183 GGTGCTTTAGAACAAAGTGCATCTAAAGGT--AATGTTGATGATTACATTGTCCTTGCAG 4240 || |||||||| ||| |||| |||||||| |||| ||||| || | | | || Sbjct 21327 GGAGCTTTAGAGCAAGGTGCGGCTAAAGGTGGAATG--GATGACTATTTAATAATAGCCA 21270 Query 4241 TTTCTTCTGAAGGTACAGTACG---TGACTCAGTTGGGGATACAATCAAAATGGAGCTTC 4297 | |||||||||||||||||| || | | ||| |||| ||||||||| ||| Sbjct 21269 CTAGTTCTGAAGGTACAGTACGAAATGGCCC---TGGAGATAGTATCAAAATGATGCT-- 21215 Query 4298 TAAAGATACTCCGTAA--TGAGTATGAAGATCCCCATACTTCA--ATCTGGTATTATAAA 4353 || |||| || || ||| ||| |||| | || ||| || |||| ||||| Sbjct 21214 TATGGATATTCTTAAAGGTGAATATATCAATCCGC--ACGTCAGTATTTGGTGGTATAAG 21157 Query 4354 CTAGATGACGTTCGCGAAGTGAATGATCCTAACATGTGGATTAAAGCTAGTCCAAATATT 4413 |||||| | | |||||| | || | |||||| ||||||| | ||||||||| Sbjct 21156 CTAGATAAATTAGATGAAGTGGCGCAACCAGATATGTGGCTTAAAGCCAATCCAAATATC 21097 Query 4414 GGCGTTACAGTTTCATATGAAACTTATGAACGTGACATCAAAAGGGCTGAAGCGAATCCG 4473 || || || ||||| || || || || || | |||| || ||| || Sbjct 21096 GGTAAGACTGTATCATACGAGACATACCAATTGGATGTAGAAAGAGCAGAAAAAGCACCT 21037 Query 4474 GTTGTTCGTAACGATATTCTCGCTAAGCGTTTCGGTATCCCAGTTGAAGGTTATACTTAT 4533 | | ||| || ||||| | ||||| || || ||||| || | ||||||||||| || Sbjct 21036 GCTAATCGAAATGATATCTTAGCTAAACGCTTTGGTATACCTATGGAAGGTTATACCTAC 20977 Query 4534 TACTTTACTTATGATGAAACAC 4555 || || || ||||| ||||||| Sbjct 20976 TATTTCACGTATGAAGAAACAC 20955 Score = 82.4 bits (90), Expect = 3e-11 Identities = 238/356 (67%), Gaps = 13/356 (4%) Strand=Plus/Minus Query 9478 TGGGACGTCCTTGACGAACGTGAATATGAAACTGGTGTTGACCACGGGGTCTTGTACCTA 9537 ||||||| || | ||||| | |||||||||||| |||||||| || ||||| || Sbjct 23086 TGGGACGCCCAGGGCGAACATTTTTATGAAACTGGTACAGACCACGGTGTATTGTATCTG 23027 Query 9538 TATAACCAACGAACTAGATCT-TATGATAGTGGTGTTGTTTGGAATGGTCTTACTGGTAT 9596 | ||| || ||| | | | ||| || ||||| | |||||||||||||| ||| | Sbjct 23026 T-TAAACAGCGA---CGGTGTATATAGTAACGGTGTAGCATGGAATGGTCTTACCGGTGT 22971 Query 9597 TTCAGAATCTCCAGATGGTGCCGAATCAAATCCACAATATGCTGATAACATGAAATAT-T 9655 | || ||||| || || ||| | | |||||| ||||| || |||||| | Sbjct 22970 AACTGAGTCTCCGTCCGGAGCAGAAGAGACGGCGTTATATGCAGATAATATTAAATATCT 22911 Query 9656 TGAACTTGATCTCAGCTGAAAACTTTGGATTCACTATCAATGCTTTTGGATCACCTAAAG 9715 || ||| ||| || || | ||||| ||||| |||| ||| || ||| | | | Sbjct 22910 TGCTCTT-CGCTCTGCAGAGGAATTTGGTTTCACGATCACTGC-TTACGATTATCCGGAT 22853 Query 9716 AATTTGATG-AATGCGATGGTAATGC--AACTCCGGTTGCTGGTGTTACATTTGGTCAAC 9772 | | |||| | |||||||| ||| || | || |||||||||| | || || | Sbjct 22852 GAGTGGATGCAGTGCGATGGCTCTGCTGAAGTTATGT--CTGGTGTTACTATCGGCCAGC 22795 Query 9773 AAGCACGCAAAATGTTTGGTTTCGCTTATCGTACACTTATTGGTGATGGTTCTAAG 9828 | || || ||| ||||||||| |||||| | || |||| ||| | || || Sbjct 22794 AGGCTCGTAAAGCATTTGGTTTCTGCTATCGTTCTATTGTTGGAAATGATACTCAG 22739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171109638577050