Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_024207.1 Length=159656 Score E Sequences producing significant alignments: (Bits) Value seq4630 98.7 1e-15 >seq4630 Length=6049 Score = 98.7 bits (108), Expect = 1e-15 Identities = 251/381 (66%), Gaps = 1/381 (0%) Strand=Plus/Minus Query 7346 GCTTTAAAATTGTATAAAGGTTTGATGATATCTTTGATATCGATTGTATCTTTCGTGTTC 7405 |||||||||||||| | ||||| || || || | || || | || || | Sbjct 4200 GCTTTAAAATTGTAAACCGGTTTCATAATTTCAATAATTTCTACAGTTTCGCCAATAACG 4141 Query 7406 TCGATAATTTCATCCATAGGTTTGTACACCATAGGAGCTTCATCTAATGTGCTCTCAACA 7465 || ||||| ||||| | | |||||| | || | |||||| | || | ||| Sbjct 4140 TCAATAATATCATCAAGCGTTTTGTAGGCTTGCGGCGATTCATCAAGCGTATTTTCATTT 4081 Query 7466 ACAGAAGTTGTCCAAACGCCAGCCATTGTATTTGTAAATTCTTCGATGTCTAGTGAATCC 7525 || |||||||| ||| || ||||||| ||| ||| ||||| | | |||||| Sbjct 4080 ACCGAAGTTGTATAAATCCCCGCCATTGAGTTTTGAAAATCTTCAAGCGAAATTGAATCT 4021 Query 7526 TTAGCTTTTCTACGGCTCATAATACGTCCTGCTCCATGAGGTGCAGAAAAGTTCCAATCA 7585 || || | | || ||| ||||| ||||| || || || || ||| | ||||| ||| Sbjct 4020 TTGGCAGTGCCGCGTGACATTATACGCCCTGCGCCGTGCGGAGCCGAATAATTCCATTCA 3961 Query 7586 GGATTACCTTTACCAAACGCAATGATAGAACCATCTCGCATGTTGATAGGGATAATTACT 7645 | ||| |||||||| | ||| | | || || || ||||| || || || || | ||| Sbjct 3960 GCATTTCCTTTACCTACCGCCAAAACCGAGCCGTCACGCATATTTATTGGAATTAAAACT 3901 Query 7646 CGTTCTCCTTGTTGAGCTGAGATAGCACCTTTACGCATAATCATATTGTCCATATCGATA 7705 ||| || || || | ||||| || || |||| |||||| | || | || || Sbjct 3900 TTTTCGCCCGCGTGCGCCGCAATAGCTCCCTTGCGCAGAATCATTTCTTCAACGTCAATG 3841 Query 7706 TAGTTATGGATAGTATCGAAA 7726 || || ||||| |||| |||| Sbjct 3840 TAATTGTGGATTGTAT-GAAA 3821 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 8296 CATACCGCAACCGATATCGACTCCTACTAGATTTGAAACAATTTTATCTTGAATCGTCAT 8355 ||| ||||| || ||||| || ||||| | ||||| || |||||||||||||||||| Sbjct 3232 CATTCCGCAGCCAATATCTACGCCTACAACATTTGGTACGGCTTTATCTTGAATCGTCAT 3173 Query 8356 TGTTGTACCAATCGTACATCCTGCACCTGCATGCGTATCAGGCATAATACGAATCTTA 8413 ||||||||| || || || || | || || || |||||||| || | ||| ||| Sbjct 3172 TGTTGTACCGATTGTGCAACCCGTGCCCGCGTGTACGTCAGGCATTATCCTAATTTTA 3115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510738644720640