Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_024208.1 Length=54173 Score E Sequences producing significant alignments: (Bits) Value seq1602 178 4e-40 >seq1602 Length=30070 Score = 178 bits (196), Expect = 4e-40 Identities = 337/485 (69%), Gaps = 22/485 (5%) Strand=Plus/Minus Query 4103 TTGAAGTTAGACCTATGCGGGTTGATAAGCTTCAAGGTAGTCGAT-CAAAGTATAATACT 4161 ||| ||| || || ||| ||||| ||||||||||| |||| ||| ||| |||| Sbjct 21428 TTGCAGTAAGGCCAATGACAGTTGACAAGCTTCAAGGATTACGATGCAAGGTA-GCTACT 21370 Query 4162 GTTGATGAATGGTTATCTGGAGATGTTAAAGAAGATGTAGTTGGTGCTTTAGAACAAAGT 4221 || ||||||||| | ||||| ||| || |||||||||| |||| |||||||| ||| || Sbjct 21369 GTCGATGAATGGCTTTCTGGCGATATTCGAGAAGATGTAATTGGAGCTTTAGAGCAAGGT 21310 Query 4222 GCATCTAAAGGT--AATGTTGATGATTACATTGTCCTTGCAGTTTCTTCTGAAGGTACAG 4279 || |||||||| |||| ||||| || | | | || | |||||||||||||| Sbjct 21309 GCGGCTAAAGGTGGAATG--GATGACTATTTAATAATAGCCACTAGTTCTGAAGGTACAG 21252 Query 4280 TTCG---TGACTCTGTTGGGGATACAATCAAAATGGAGCTTCTAAAGATACTTCGTAA-- 4334 | || || | | ||| |||| ||||||||| ||| || |||| ||| ||| Sbjct 21251 TACGAAATGGCCC---TGGAGATAGTATCAAAATGATGCT--TATGGATA-TTCTTAAAG 21198 Query 4335 -TGAGTATGAAGATCCCCATACTTCA--ATCTGGTATTATAAACTAGATGATGTTCGCGA 4391 ||| ||| |||| | || ||| || |||| ||||| |||||| | | || Sbjct 21197 GTGAATATATCAATCCGC--ACGTCAGTATTTGGTGGTATAAGCTAGATAAATTAGATGA 21140 Query 4392 AGTGAATGATCCTAACATGTGGATTAAAGCTAGTCCAAATATTGGTGTTACAGTTTCATA 4451 |||| | || | |||||| ||||||| | ||||||||| ||| || || ||||| Sbjct 21139 AGTGGCGCAACCAGATATGTGGCTTAAAGCCAATCCAAATATCGGTAAGACTGTATCATA 21080 Query 4452 TGAAACTTACGAACGTGACATTAAAAGGGCAGAAGCGAATCCGGTTGTTCGTAATGATAT 4511 || || ||| || || | |||| |||||| || | | ||| |||||||| Sbjct 21079 CGAGACATACCAATTGGATGTAGAAAGAGCAGAAAAAGCACCTGCTAATCGAAATGATAT 21020 Query 4512 TCTCGCTAAGCGTTTCGGTATCCCAGTTGAAGGTTATACTTATTACTTTACTTATGATGA 4571 | ||||| || || ||||| || | ||||||||||| || || || || ||||| || Sbjct 21019 CTTAGCTAAACGCTTTGGTATACCTATGGAAGGTTATACCTACTATTTCACGTATGAAGA 20960 Query 4572 AACAC 4576 ||||| Sbjct 20959 AACAC 20955 Score = 82.4 bits (90), Expect = 3e-11 Identities = 240/360 (67%), Gaps = 15/360 (4%) Strand=Plus/Minus Query 9499 TGGGACGTACTTGACGAACGTGAATATGAAACTGGTGTTGACCACGGGGTCTTGTACCTA 9558 ||||||| | | ||||| | |||||||||||| |||||||| || ||||| || Sbjct 23086 TGGGACGCCCAGGGCGAACATTTTTATGAAACTGGTACAGACCACGGTGTATTGTATCTG 23027 Query 9559 TATAACCAACTAACTAGATCT-TATGATAGTGGTGTTGTTTGGAATGGTCTTACTGGTAT 9617 | ||| || | | | | | ||| || ||||| | |||||||||||||| ||| | Sbjct 23026 T-TAAACAGCGA---CGGTGTATATAGTAACGGTGTAGCATGGAATGGTCTTACCGGTGT 22971 Query 9618 TTCGGAATCTCCAGATGGGGCCGAATCAAATCCACAATATGCTGATAACATGAAATAT-T 9676 | || ||||| || || ||| | | |||||| ||||| || |||||| | Sbjct 22970 AACTGAGTCTCCGTCCGGAGCAGAAGAGACGGCGTTATATGCAGATAATATTAAATATCT 22911 Query 9677 TGAACTTGATCTCAGCTGAAAACTTTGGATTCACTATCAATGCTTTTGGATCACCTAAAG 9736 || ||| ||| || || | ||||| ||||| |||| ||| || ||| | | | Sbjct 22910 TGCTCTT-CGCTCTGCAGAGGAATTTGGTTTCACGATCACTGC-TTACGATTATCCGGAT 22853 Query 9737 AATTTGATG-AATGCGATGGTAACGCAACTCCAGTTA---ATGGTGTTACATTTGGCCAA 9792 | | |||| | |||||||| | | || ||||| ||||||||| | ||||| Sbjct 22852 GAGTGGATGCAGTGCGATGG---CTCTGCTGAAGTTATGTCTGGTGTTACTATCGGCCAG 22796 Query 9793 CAAGCACGTAAAATGTTTGGTTTCGCTTATCGTACACTTATTGGTGATGGTTCTAAGGGT 9852 || || |||||| ||||||||| |||||| | || |||| ||| | || || || Sbjct 22795 CAGGCTCGTAAAGCATTTGGTTTCTGCTATCGTTCTATTGTTGGAAATGATACTCAGCGT 22736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 173221510694130