Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_024214.1 Length=55584 Score E Sequences producing significant alignments: (Bits) Value seq1602 194 6e-45 >seq1602 Length=30070 Score = 194 bits (214), Expect = 6e-45 Identities = 534/803 (67%), Gaps = 38/803 (5%) Strand=Plus/Minus Query 3787 AAGAAACGTTTA---CGAAATAAACAATACTTAATTATTGCACGGGGTAATTCCAAGACT 3843 ||||| |||||| |||| | || || ||||| | ||||| || | | ||| || Sbjct 21741 AAGAAGCGTTTAGTGCGAACT---CAGTATTTAATAGTAGCACGAGGCGCTGCTAAGTCT 21685 Query 3844 TTATATGAAACAACAATTCAAGCATATGGATTAACTGTAGATACATCAACTACAA--CAG 3901 | ||||||| || ||| ||||| | | ||||||||| ||||| ||| || Sbjct 21684 ATGTATGAAAGTTGTATACAATCATATCATCTTAATGTAGATACCTCAACCACATACCAA 21625 Query 3902 GTATCACAACAGCTCCAACCATGAAACAAGCGTTAGAAGTAATTCAGCCACTGTCTACTG 3961 || ||||||||| ||||| ||| ||||| ||||| || ||| | || | Sbjct 21624 GT--CACAACAGCACCAACGATGCTGCAAGCAGACGAAGTTATGTCTCCAATCCGAACAG 21567 Query 3962 CTATTACTAGGGCTAAAGGACCTTTCTTTAAACTAGTAACTCAAGGT--AGTACGAAAG- 4018 | |||||| | || | ||| || || ||| | | ||||| ||||| | | | ||| Sbjct 21566 CGATTACTCGTGCCAGAGGTCCGTTGTTTCAGATGTTAACTGAAGGTTCACTTCAAAATA 21507 Query 4019 ---CTCGTAGTGGTCCGAACCAAGCAATGCTTGCTACTACGAAAAAAGGTGTTGAGAACA 4075 | |||| | || | || | | |||| ||| || || ||| | ||||| Sbjct 21506 CGACCGGTAGCAAAGCTAATCGAGTTAAATTAGCTAGTACAAAGAAGGGTATCGAGAATT 21447 Query 4076 AACTGACGAACTCTATTCTTGAAGTTAGACCTATGCGGGTTGATAAGCTTCAAGGTAGTC 4135 | || || || ||| ||| || || ||| ||||| ||||||||||| | Sbjct 21446 TCTTAACAGGATCAATGATTGCAGTAAGGCCAATGACAGTTGACAAGCTTCAAGGATTAC 21387 Query 4136 GAT-CAAAGTATAATACTGTTGATGAATGGTTATCAGGAGATGTTAAAGAAGATGTAGTT 4194 ||| ||| ||| |||||| ||||||||| | || || ||| || |||||||||| || Sbjct 21386 GATGCAAGGTAGC-TACTGTCGATGAATGGCTTTCTGGCGATATTCGAGAAGATGTAATT 21328 Query 4195 GGTGCTTTAGAACAAAGTGCATCTAAAGGT--AATGTTGATGATTACATTGTCCTTGCAG 4252 || |||||||| ||| |||| |||||||| |||| ||||| || | | | || Sbjct 21327 GGAGCTTTAGAGCAAGGTGCGGCTAAAGGTGGAATG--GATGACTATTTAATAATAGCCA 21270 Query 4253 TTTCTTCTGAAGGTACAGTTCG---TGACTCAGTTGGAGATACAATCAAAATGGAGCTTC 4309 | ||||||||||||||| || || | | |||||||| ||||||||| |||| Sbjct 21269 CTAGTTCTGAAGGTACAGTACGAAATGGCCC---TGGAGATAGTATCAAAATGATGCTTA 21213 Query 4310 TAAAGATACTTCGTAA---TGAGTATGAAGATCCCCATACTTCA--ATCTGGTATTATAA 4364 | |||| ||| ||| ||| ||| |||| || | ||| || |||| ||||| Sbjct 21212 TG--GATA-TTCTTAAAGGTGAATATATCAATCCGCA--CGTCAGTATTTGGTGGTATAA 21158 Query 4365 ACTAGATGATGTTCGCGAAGTGAATGATCCTAACATGTGGATTAAAGCTAGTCCAAATAT 4424 |||||| | | |||||| | || | |||||| ||||||| | ||||||||| Sbjct 21157 GCTAGATAAATTAGATGAAGTGGCGCAACCAGATATGTGGCTTAAAGCCAATCCAAATAT 21098 Query 4425 TGGTGTTACAGTTTCATACGAAACTTACGAACGTGACATCAAAAGGGCTGAAGCGAATCC 4484 ||| || || |||||||| || ||| || || | |||| || ||| || Sbjct 21097 CGGTAAGACTGTATCATACGAGACATACCAATTGGATGTAGAAAGAGCAGAAAAAGCACC 21038 Query 4485 TGTTGTTCGTAATGATATTCTTGCTAAGCGTTTCGGTATCCCAGTTGAAGGTTATACTTA 4544 || | ||| |||||||| | ||||| || || ||||| || | ||||||||||| || Sbjct 21037 TGCTAATCGAAATGATATCTTAGCTAAACGCTTTGGTATACCTATGGAAGGTTATACCTA 20978 Query 4545 TTACTTTACTTATGATGAAACAC 4567 || || || ||||| ||||||| Sbjct 20977 CTATTTCACGTATGAAGAAACAC 20955 Score = 80.6 bits (88), Expect = 9e-11 Identities = 230/344 (67%), Gaps = 15/344 (4%) Strand=Plus/Minus Query 9492 TGGGACGTACTTGACGAACGTGAATATGAAACTGGTGTTGACCACGGGGTCTTGTACCTA 9551 ||||||| | | ||||| | |||||||||||| |||||||| || ||||| || Sbjct 23086 TGGGACGCCCAGGGCGAACATTTTTATGAAACTGGTACAGACCACGGTGTATTGTATCTG 23027 Query 9552 TATAACCAACTAACTAGATCT-TATGATAGTGGTGTTGTTTGGAATGGTCTTACTGGTAT 9610 | ||| || | | | | | ||| || ||||| | |||||||||||||| ||| | Sbjct 23026 T-TAAACAGCGA---CGGTGTATATAGTAACGGTGTAGCATGGAATGGTCTTACCGGTGT 22971 Query 9611 TTCGGAATCTCCAGATGGGGCCGAATCAAACCCACAATATGCTGATAACATGAAATAT-T 9669 | || ||||| || || ||| | | |||||| ||||| || |||||| | Sbjct 22970 AACTGAGTCTCCGTCCGGAGCAGAAGAGACGGCGTTATATGCAGATAATATTAAATATCT 22911 Query 9670 TGAACTTGATCTCAGCTGAAAACTTTGGATTCACTATCAATGCTTTTGGATCACCTAAAG 9729 || ||| ||| || || | ||||| ||||| |||| ||| || ||| | | | Sbjct 22910 TGCTCTT-CGCTCTGCAGAGGAATTTGGTTTCACGATCACTGC-TTACGATTATCCGGAT 22853 Query 9730 AATTTGATG-AATGCGATGGTAACGCAACTCCAGTTA---ATGGTGTTACATTTGGCCAA 9785 | | |||| | |||||||| | | || ||||| ||||||||| | ||||| Sbjct 22852 GAGTGGATGCAGTGCGATGG---CTCTGCTGAAGTTATGTCTGGTGTTACTATCGGCCAG 22796 Query 9786 CAAGCACGTAAAATGTTTGGTTTCGCTTATCGTACACTTATTGG 9829 || || |||||| ||||||||| |||||| | || |||| Sbjct 22795 CAGGCTCGTAAAGCATTTGGTTTCTGCTATCGTTCTATTGTTGG 22752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 177736437295948