Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_024215.1 Length=54452 Score E Sequences producing significant alignments: (Bits) Value seq1602 165 3e-36 >seq1602 Length=30070 Score = 165 bits (182), Expect = 3e-36 Identities = 524/800 (66%), Gaps = 32/800 (4%) Strand=Plus/Minus Query 3775 AAGAAACGTTTA---CGAAATAAACAGTACTTAATTATTGCACGGGGTAATTCCAAGACT 3831 ||||| |||||| |||| | ||||| ||||| | ||||| || | | ||| || Sbjct 21741 AAGAAGCGTTTAGTGCGAACT---CAGTATTTAATAGTAGCACGAGGCGCTGCTAAGTCT 21685 Query 3832 TTATACGAAACAACAATTCAAGCATATGGGTTAACTGTAGATACATCAACTACAACTGGT 3891 | || |||| || ||| ||||| | | ||||||||| ||||| ||| Sbjct 21684 ATGTATGAAAGTTGTATACAATCATATCATCTTAATGTAGATACCTCAACCACATACCAA 21625 Query 3892 ATTACAACAGCTCCAACCATGAAACAAGCGTTAGAAGTAATTCAACCACTGTCTACTGCT 3951 | |||||||| ||||| ||| ||||| ||||| || ||| | || || Sbjct 21624 GTCACAACAGCACCAACGATGCTGCAAGCAGACGAAGTTATGTCTCCAATCCGAACAGCG 21565 Query 3952 ATTACTAGGGCTAAAGGACCTTTCTTTAAACTAGTAACTCAAGGT--AGTACGAAAG--- 4006 |||||| | || | ||| || || ||| | | ||||| ||||| | | | ||| Sbjct 21564 ATTACTCGTGCCAGAGGTCCGTTGTTTCAGATGTTAACTGAAGGTTCACTTCAAAATACG 21505 Query 4007 -CTCGTAGTGGTCCGAACCAAGCAATGCTTGCTACTACGAAAAAGGGTGTTGAAAACAAA 4065 | |||| | || | || | | |||| ||| || |||||| | || || Sbjct 21504 ACCGGTAGCAAAGCTAATCGAGTTAAATTAGCTAGTACAAAGAAGGGTATCGAGAATTTC 21445 Query 4066 CTGACGAACTCTATTCTTGAAGTTAGACCTATGCGGGTTGATAAGCTTCAAGGTAGTCGA 4125 | || || || ||| ||| || || ||| ||||| ||||||||||| ||| Sbjct 21444 TTAACAGGATCAATGATTGCAGTAAGGCCAATGACAGTTGACAAGCTTCAAGGATTACGA 21385 Query 4126 T-CAAAGTATAATACTGTTGATGAATGGTTATCAGGAGATGTTAAAGAAGATGTAGTCGG 4184 | ||| ||| |||||| ||||||||| | || || ||| || |||||||||| | || Sbjct 21384 TGCAAGGTAGC-TACTGTCGATGAATGGCTTTCTGGCGATATTCGAGAAGATGTAATTGG 21326 Query 4185 TGCTTTAGAACAAAGTGCATCTAAAGGT--AATGTCGATGATTACATTGTCCTTGCAGTT 4242 |||||||| ||| |||| |||||||| |||| ||||| || | | | || | Sbjct 21325 AGCTTTAGAGCAAGGTGCGGCTAAAGGTGGAATG--GATGACTATTTAATAATAGCCACT 21268 Query 4243 TCTTCTGAAGGTACAGTTCG---TGACTCTGTTGGGGATACAATCAAAATGGAGCTTCTA 4299 ||||||||||||||| || || | ||| | |||| ||||||||| |||| | Sbjct 21267 AGTTCTGAAGGTACAGTACGAAATGGCCCTG---GAGATAGTATCAAAATGATGCTTATG 21211 Query 4300 AAGATACTCCGTAA--TGAGTATGAAGATCCCCATACTTCA--ATCTGGTATTATAAACT 4355 |||| || || ||| ||| |||| || | ||| || |||| ||||| || Sbjct 21210 --GATATTCTTAAAGGTGAATATATCAATCCGCA--CGTCAGTATTTGGTGGTATAAGCT 21155 Query 4356 AGATGATGTTCGCGAAGTTAATGATCCTAACATGTGGATTAAAGCTAGTCCAAATATTGG 4415 |||| | | ||||| | || | |||||| ||||||| | ||||||||| || Sbjct 21154 AGATAAATTAGATGAAGTGGCGCAACCAGATATGTGGCTTAAAGCCAATCCAAATATCGG 21095 Query 4416 TGTTACAGTTTCATATGAAACTTACGAACGTGACATCAAAAGGGCAGAAGCGAATCCGGT 4475 | || || ||||| || || ||| || || | |||| |||||| || | Sbjct 21094 TAAGACTGTATCATACGAGACATACCAATTGGATGTAGAAAGAGCAGAAAAAGCACCTGC 21035 Query 4476 TGTTCGTAATGATATTCTCGCTAAGCGTTTCGGTATCCCAGTTGAAGGTTATACTTATTA 4535 | ||| |||||||| | ||||| || || ||||| || | ||||||||||| || || Sbjct 21034 TAATCGAAATGATATCTTAGCTAAACGCTTTGGTATACCTATGGAAGGTTATACCTACTA 20975 Query 4536 CTTTACTTATGATGAAACAC 4555 || || ||||| ||||||| Sbjct 20974 TTTCACGTATGAAGAAACAC 20955 Score = 82.4 bits (90), Expect = 3e-11 Identities = 240/359 (67%), Gaps = 13/359 (4%) Strand=Plus/Minus Query 9478 TGGGACGTCCTTGACGAACGTGAATACGAAACTGGTGTTGACCACGGGGTCTTGTACCTA 9537 ||||||| || | ||||| | || ||||||||| |||||||| || ||||| || Sbjct 23086 TGGGACGCCCAGGGCGAACATTTTTATGAAACTGGTACAGACCACGGTGTATTGTATCTG 23027 Query 9538 TATAACCAACGAACTAGATCT-TATGATAGTGGTGTTGTTTGGAATGGTCTTACTGGTAT 9596 | ||| || ||| | | | ||| || ||||| | |||||||||||||| ||| | Sbjct 23026 T-TAAACAGCGAC---GGTGTATATAGTAACGGTGTAGCATGGAATGGTCTTACCGGTGT 22971 Query 9597 TTCAGAATCTCCAGATGGTGCCGAATCAAATCCACAATATGCTGATAACATGAAATAT-T 9655 | || ||||| || || ||| | | |||||| ||||| || |||||| | Sbjct 22970 AACTGAGTCTCCGTCCGGAGCAGAAGAGACGGCGTTATATGCAGATAATATTAAATATCT 22911 Query 9656 TGAACTTGATCTCAGCTGAAAACTTTGGATTCACTATCAATGCTTTTGGATCACCTAAAG 9715 || ||| ||| || || | ||||| ||||| |||| ||| || ||| | | | Sbjct 22910 TGCTCTT-CGCTCTGCAGAGGAATTTGGTTTCACGATCACTGC-TTACGATTATCCGGAT 22853 Query 9716 AATTTGATG-AATGCGATGGTAATGC--AACCCCTGTTGCTGGTGTTACATTTGGTCAAC 9772 | | |||| | |||||||| ||| || ||| |||||||||| | || || | Sbjct 22852 GAGTGGATGCAGTGCGATGGCTCTGCTGAAGTTATGT--CTGGTGTTACTATCGGCCAGC 22795 Query 9773 AAGCACGTAAAATGTTTGGTTTCGCTTATCGTACACTTATTGGTGATGGTTCTAAGGGT 9831 | || |||||| ||||||||| |||||| | || |||| ||| | || || || Sbjct 22794 AGGCTCGTAAAGCATTTGGTTTCTGCTATCGTTCTATTGTTGGAAATGATACTCAGCGT 22736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174114256634532